Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F12 I0 R1
|
131 |
9881.0 |
7547414 |
98.3% |
7419107 |
134.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,423 |
A→C |
21.7% |
V85V (GTT→GTG) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,423 | 0 | A | C | 21.7%
| 158.4
/ 17.4
| 117 | V85V (GTT→GTG) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (48/40); new base C (3/25); total (51/66) |
| Fisher's exact test for biased strand distribution p-value = 4.93e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 132 total aligned reads displayed.
AGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACT > NZ_CP022686/2546284‑2546562
|
gTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 8:642503/1‑138 (MQ=255)
tcccGCTCAAAGGCGGCATAATGGAGATAACGTGACGTCAGGCGATAGAAAAAGCCGGTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAACAGTCCAGCCCCGGCATTATATTTAATCCAACggc > 4:174756/2‑138 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 4:943687/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 3:273675/1‑140 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAC‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:656504/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:536672/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 7:494193/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 6:571287/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 1:66225/1‑138 (MQ=255)
gggcggaATAATGGCGAAAACGTCACGACAGGCGATTCAAAACGCCTTTCTCCGGCTCTACTTTCTCGGAATAACAAA‑CT‑TCAGCGCCATAAAAACCGACCAGCCCGGGAATTTTATAAAATCCAACGACTCTATCGACg < 4:287568/139‑1 (MQ=255)
cggcggcATATTGGCTATAACGTGCCTGCTGGCGTTATAAAACGCCTTTCTCCTGCGCTACTTTCGCGCCAAAACAAA‑CA‑TCTGCGCCATAATAACCGTCCCGCCCCGGCATTTTATTAAAGCCCACGACTCTATCGa < 6:309114/137‑1 (MQ=255)
cggcggcATAATGCCTATACCGTGACGGCAGGCTATAGAAAAAGCATTTCTCCTGCGCTACTTTCTCGGCAAAACAAA‑CA‑TCCGCGGAATAAAAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACg < 4:446093/139‑1 (MQ=255)
cggcggaATAAGGGCTATAACGTGACGTCCGGCTATACAAAAAGCCTTTCTCCTGCGCTACTTTCGCGGCATAAAAAA‑CA‑TCAGCGTCATAATAACCGTCCCGCCCCGGAATTTTATTAAATCCAACGACTCTATCGa < 2:965097/137‑1 (MQ=255)
gcgaaatatTGGCGATAAGGTTTTGTCTGGGTAGAGAAAAAGCGTTTCTCCTGGGCTACTATAGCGGAATAAAAAA‑CA‑TCTGGCGAAAATTAAACGTCCAGCCCGGGAATTTTATTAAATCCAACGACTCTATCGACg < 2:848458/133‑1 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 1:299318/1‑138 (MQ=255)
ggCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCAc > 8:43876/1‑138 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 4:833268/1‑140 (MQ=255)
aTAAAGTGACGTCAGTCGATAGAAAAAGCCTTTCTCATGAGCTAGTTTCTCGGCATAACAAA‑AA‑TCAGCTGCATAATAAACTTCAAGACACGGCATTTTATTAAATCCAACGACTCTATCGACGTGGTGTTAAAGTAAAt > 4:885523/1‑140 (MQ=255)
aaCGTTACGTCATGCGATAGAAAAAGCCTTTATCCTGAGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGTCATAATAATCGTCCAGCACAGCCATTTTATTAAATACCACGACTCTATCGACGGGGTGTTCACGTAAAt > 8:248134/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACACA‑CA‑TCAGCGGCATAATAACCGTCCAGCCCCGGCAGTTTATTAAATACAACGACTCTATCGACGGGGTGTGCACGTAAAt > 5:703009/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 8:153649/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 5:849333/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 1:186086/1‑138 (MQ=255)
gTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGtt > 7:215521/1‑138 (MQ=255)
gACGTCTGGCTATAGAAAACCCCTTTCTCAGCCCCAACTTGAGCGCCA‑AACAAA‑AACTCAGCGCCAAAAAAACCCGCCAGCCCCGCAATTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGtttt < 6:445671/138‑1 (MQ=255)
gTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAATCTATAGACGGGGTGTTCACGTAAATGTTTTTga > 6:643009/1‑137 (MQ=255)
tccggCCATAGAAAAAGCCTATCTCCTGCGCTACTTGGTCGGCTTAACAAA‑CA‑TCTGCGGCATAATAATGGTCCAGCCCCGCCTTTTTATTAAATCAAACGTCTCTATCGACGGGGTGTTCACGTAAATGTGTTTGCAcc < 4:544432/137‑1 (MQ=255)
gCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCa > 6:294081/1‑138 (MQ=255)
taTAGAAACCGCATTTCACCGGCGCTACTTTCTCGGAAAACCAAA‑CA‑CCCGCGGAATAATAACCGCCACCCCCCGGAATTTTATTAACCCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 3:669446/139‑1 (MQ=255)
gATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGCCGGGGGGTTCACGTAAAGTTTTTTGCCCCCAgg > 2:215764/1‑138 (MQ=255)
aacaaaaaCCCTTTCTCCTGCGCTACTTTCTCGGAATAACAAA‑CA‑TCCGCGGCATAATAACCGCCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCa < 7:502348/135‑1 (MQ=255)
gAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGTGTGTTCACGTAAATCTTTTTGCACCCAGCCaaa > 6:882504/1‑138 (MQ=255)
caaaaaCCCTGTAGCCTCCGCTACTATCGCGACA‑AACAAACCA‑TCACCCGCATAAACACCGCCCCGCCCCGCCATCTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaa < 6:54640/137‑1 (MQ=255)
acccgtttCTCCTGCTCTACTTTCTCGGCAAAACAAA‑CA‑ACAGCGGCAAAATAACCGTCCTCCCCCGGAATTTTATTAACACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAatat < 6:758912/133‑1 (MQ=255)
actcCTGGGCTAATTGCTGGTCATAAAAAA‑AT‑CCCGCGCAATATTAACCGGCCACCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAt < 2:214155/137‑1 (MQ=255)
tcCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg > 7:470014/1‑138 (MQ=255)
acgggcgcTAATTTCTCGCCAAAACAAA‑CT‑TCCCCGGCATAATAACCGTCCAGCCCCGCCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 4:146438/136‑1 (MQ=255)
accggcgcAACTTGCTCGGCATAACAAC‑CA‑TCCCCGGCATAATACCGCGCCAGCCCCGGCATTTTAATACACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 7:224412/134‑1 (MQ=255)
gggcgaTATTTTCTCGGAATAACAAA‑AA‑TCCGGGCAATATAAAACCCCCGCCCCCGGATTTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTgcg < 5:799178/136‑1 (MQ=255)
gcTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 6:678413/1‑138 (MQ=255)
taatttCTCGCCAAAAAAAA‑AA‑TCAGGGCAATAAAAAACGGAACGCGCCGCCTTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 3:468380/137‑1 (MQ=255)
tACTTTCTCGTAAAAACAAA‑CA‑TCAGCGGAATAATAACCGCCCAGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 1:562668/138‑1 (MQ=255)
tACTTTCTCGGCATAAAAAA‑CA‑TCAGCGGCATAATAACCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 2:912675/138‑1 (MQ=255)
tACTTTCGCGGAATAACAAA‑CA‑TCCGCGGCATAAAAAATGTCCAGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 4:415669/140‑1 (MQ=255)
aaCTTTCTCGGCATAACAAA‑CA‑TCCGCGCCAAAATAACCGTCCCGCCCCTTCATTTTATTAAATCCCACGACTCTCTCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 2:895987/137‑1 (MQ=255)
aTAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAtt > 3:425696/1‑140 (MQ=255)
aacaaa‑ca‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGAtt > 8:527359/1‑138 (MQ=255)
caaa‑ca‑TCAGCGGCAAAATAACCGTCACGCCCCGGCATTTAATTAAATCCCACGACTCTATAGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTa < 2:243597/138‑1 (MQ=255)
aa‑ca‑TCTCCGGAATAATACCCGTCCAGCCCCGGCATTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 5:271188/138‑1 (MQ=255)
aa‑ca‑TCCGCGGCATAAAAACCGCCCCGCCCCGGCATTTTATTAAAACACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCAATGCGCCCGTGATTGGTATGCGATTTAAc < 8:639801/138‑1 (MQ=255)
aa‑ca‑TCAGCGGCATAATAAACGTCCTGCCCCGGCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAGTGGTATGCGATTTAAc < 8:531353/138‑1 (MQ=255)
aa‑ca‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 4:518398/140‑1 (MQ=255)
a‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCgg > 7:196973/1‑138 (MQ=255)
aacAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa > 3:14733/3‑140 (MQ=255)
tcATAATAAAGGTCATGCGCTGGATTTTTTATATAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGGACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGAGAATTAACCGGCTCTTTg < 1:81910/137‑1 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg < 2:299318/138‑1 (MQ=255)
cctacataaCCGTCCCGCCCCGGCATTTTATAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 3:871610/135‑1 (MQ=255)
ccATAATAACCGTCCTCCCCCGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGAt < 4:137100/139‑1 (MQ=255)
caaaaataaCCGTCCAGCCCCGGAATTTTATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTTGTATGCGATTTAACCGGCACTTTg < 7:116365/134‑1 (MQ=255)
ctaaatacACGTCAGCCCCCGGAATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 4:275554/137‑1 (MQ=255)
cATAATAAACTACCAGCCCCGGCATTTTATAAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 4:769788/140‑1 (MQ=255)
cATAATAAACGGACCGCCCCGGCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 7:281615/138‑1 (MQ=255)
cATAAAAAACGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:429847/140‑1 (MQ=255)
aataatcAACTGCCAGCCCCGGCTTTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 1:33652/137‑1 (MQ=255)
aataataCACGGCCAGCCCCGTCATTTTATTAAATCCCACGACTCTATCGACGTGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTTGTATGCGATTTAACCGGCACTTTGATc < 4:898058/139‑1 (MQ=255)
aaaaataaCCGTCCAGCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 3:438744/137‑1 (MQ=255)
ataaaaCGCCCACCCCCGCCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCCCCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:269830/135‑1 (MQ=255)
aataaCCGGCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 5:694202/138‑1 (MQ=255)
aataaCCGCCCCGCCCCGGATTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCCGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:791585/138‑1 (MQ=255)
aataaACGTCCCGCCCCGGAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 1:434074/138‑1 (MQ=255)
aaaaaccGTCCAGCCCCGTCATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:805743/132‑1 (MQ=255)
aaaaaaCGTCCCGCCCCGGCTTTTTAATAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 1:384325/135‑1 (MQ=255)
aaaaaaCGACCCGCCCCGGCATTTTATAAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 7:638258/135‑1 (MQ=255)
ataaACGTCCAGCCCCGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGAGAGAGGTATTCGATTAAACCGGCACTTTGATCAg > 6:88860/1‑138 (MQ=255)
ataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 7:321079/1‑138 (MQ=255)
aagtcatgCCCCGGCTTTTTTATAAATCCCACGAATCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGACCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 3:440206/133‑1 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 3:840749/1‑140 (MQ=255)
tCCAGCCCCGGCATTTTATAAAATCCACCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACACAGGCAAATTATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATAc > 3:227263/1‑140 (MQ=255)
ccAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCCCCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 7:607524/1‑138 (MQ=255)
cAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTTCTCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACaa > 3:246922/1‑139 (MQ=255)
cAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACAt > 3:287646/1‑140 (MQ=255)
gCCCCGTAATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCa < 3:660873/140‑1 (MQ=255)
gCCCCGGCATTTTATTAAATCCAACGACTCTATCGCCGGGGTGTTCACGTAAATGTTTTTGCACCCAGTCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACAt > 5:143425/1‑138 (MQ=255)
gCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACAt > 5:61205/1‑138 (MQ=255)
ccGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAg > 2:144754/1‑138 (MQ=255)
tttATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTc < 5:294081/138‑1 (MQ=255)
tttATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTc < 6:849333/138‑1 (MQ=255)
tttATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTc < 5:702279/138‑1 (MQ=255)
ttattaAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGcc > 4:195504/1‑140 (MQ=255)
attaAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGcc > 2:557928/1‑138 (MQ=255)
aaaaTCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTAAACCGGCACTTTGATCAGTGCAAATACATCAGGGCATTCGCCtt < 2:409803/137‑1 (MQ=255)
tCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGAATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTAGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCa > 8:207323/1‑138 (MQ=255)
tCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACACAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTcaca > 8:264981/1‑138 (MQ=255)
aaCGCCTCTATCGACGGGGTGTTCAGTTAAATGTTTTTGCACCCAGGCAAAATATTCCGCTTTGCGCCCGTTATTGGTTTGCGATTTAACCGGCACTTTGATCTTTTCAAATAAATCAGGGCATTCGCCTTCCCACGa < 2:168205/138‑1 (MQ=255)
aaCGACTCTATCGACGGGTTGTGCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCTGGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACt < 4:488547/140‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCTGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGTCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGa < 8:604445/138‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGa < 8:215521/138‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGa < 8:745297/138‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACt < 3:936706/140‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCAAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGa < 6:496530/138‑1 (MQ=255)
|
AGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAA‑CA‑TCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACT > NZ_CP022686/2546284‑2546562
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
