Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,546,423 |
A→C |
17.2% |
V85V (GTT→GTG) |
waaG ← |
glycosyltransferase family 4 protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,546,423 | 0 | A | C | 17.2%
| 299.3
/ 17.5
| 198 | V85V (GTT→GTG) | waaG | glycosyltransferase family 4 protein |
| Reads supporting (aligned to +/- strand): ref base A (84/75); new base C (2/37); total (86/112) |
| Fisher's exact test for biased strand distribution p-value = 1.19e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 213 total aligned reads displayed.
AGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACT > NZ_CP022686/2546284‑2546562
|
gTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCTGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCa > 3:329287/1‑138 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGCCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCCACgcc > 8:1049500/1‑138 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAACAGTCCAGCCCCGGCAGTTTATTAACTCCACCGAc > 8:613277/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 5:1022858/1‑140 (MQ=255)
gCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGAGAGAAAAAGCCTTTCTCCTGAGCTACTGTCTCGGCATAACAATCATCAGCGCCATAATAAACGTCCAGCCACGTCATTTTATTAATTCCAACGag > 6:949255/1‑139 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 1:312554/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 4:922983/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGAc > 4:597176/1‑138 (MQ=255)
ccGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTGTATTAAGTCCacctcc > 1:1272953/1‑133 (MQ=255)
ccGCACAACGGGGGAATAATGGCTATACGGTGCCGTCTGGGTATAGAAAAAGCCTTTCTCCTGCGCTCCTTTGTCGTCATAACAAACATCCGCGGCATAATAAACTTCCACCCCGGGATTTTTATAAAATCCCACGAc < 2:708011/138‑1 (MQ=255)
ccGATCAATGGCGTAATATTGGCTATAACGTTCCGTCAGGGTATACAAAACGCTTTTCTCCTGCGTTATTTTCTGGGAAAAACAAAAATCTGGGGAATAATAACCGCCCACCCCCGTCATTTTATTAAATCCAACGAc < 2:681725/138‑1 (MQ=255)
gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAACGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCACCGACTCTATCGACGGGgtg > 6:22920/1‑140 (MQ=255)
gcATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtg > 6:625757/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGttgt > 7:1140544/1‑140 (MQ=255)
cATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 6:724434/1‑140 (MQ=255)
aTAATGTCGATAACGTGACTTCCGGCGATAGAAAAACCCTTTCCCATGCGCTAATTTCGCTGCATAAAAACCATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGtt < 6:303071/140‑1 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 4:1109446/1‑138 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGgtgt > 1:33283/1‑138 (MQ=255)
tAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCAAGCCCCGGCATTTTATTAAATCCAACGACTATATCTACGGGgtgt > 2:903084/1‑138 (MQ=255)
aattGGCTATACCGTGACGTCCGGCTATATAAAAACCGTTTATCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAAAAACCGCCCCCCCCCGGAATTTTATTAAAACCCACGACTCTATCGACGGGgtgt < 2:406386/135‑1 (MQ=255)
aTAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 7:65502/1‑140 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 4:1075791/1‑138 (MQ=255)
aaCGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAAt > 3:457343/1‑138 (MQ=255)
aCGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTTTCGACGGGGTGTTCACGTAAATGTATATGc > 7:827919/1‑140 (MQ=255)
cAGGCTATATAAACCTCCTTTCTCCGGCGCAACTTTCTGGGCAAAACAAACATCCGCGCAATACTAACCGTCCAGCCCCGCCATTTTATTACATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCAccc < 6:1051010/140‑1 (MQ=255)
cAGGCTATATAAAAAGCTTTTATCCTGCGATCCTTTCGCGGAAAAACAAACAGCCGCGGCATAATAACCGGCCAGCCCGGGCATTTTATTAAATCCAACGACTCTATCGACGGGGGGTTCACGTAAATGTTTTTGCAccc < 6:847909/140‑1 (MQ=255)
ggCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACAACAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAg > 5:1159507/1‑140 (MQ=255)
tAGAAAACGCCTTTCACCTGCGCTACTTTCAGGGCAAACCAAACATCCCCGCCAAAATAACCGCCCCGCCCCGGCATTTTATAAACTCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCaaa < 6:66324/140‑1 (MQ=255)
accccatttCTCCGGCCCTACTTTCTCGCCAAAACAAAAATCCGCGCCATAATAAACTTCCACCCCCGGCTTTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATAtt < 5:255983/134‑1 (MQ=255)
ttttCACCTGCGATACTTTCCCGCAAAAACAACCACCAGGCCCAAAAAAACCGCCCCCCCCCGGCATTTTAAAAAACCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCg < 3:209972/137‑1 (MQ=255)
tcCTGCTCTCTTTTCGCGGCATAAAAACCATCTGCGGCATATTACACGACCAGCCCCGTCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 1:782261/138‑1 (MQ=255)
ccgtccgcTACTTCCCCGCCAAAAAAAACAGCCGGGCCAAAAAAAACGCCCCCCCCCGGAATTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTg < 3:1084273/133‑1 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATACACGTCCAGCCCCGGCAGTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGAACACAGGCAAAATATTCCGCATTGCGCCCg > 5:460236/1‑140 (MQ=255)
gcgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCg > 8:487117/1‑140 (MQ=255)
cgcTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCgg > 8:373361/1‑139 (MQ=255)
ctactaTCTCGGCATAACAAACATCAGCGGCATAATTAACGTCAAGCACAGCCATTTTATTAAATCCAACGACTCTTTAGACGGGGTGTTCACGTAAATGTTTTTGACCCCAGGCAAAATATTACTCAGTgcgacagg > 2:46627/1‑133 (MQ=255)
tACTTTCTCGGAATAAAAAACATACGCGGAATAATAAACGACCCGCCCCGGAATTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGAt < 6:276845/140‑1 (MQ=255)
aaatttCGCGGAAAAAAAAACATCAGCGCAATAATAAACGCCCACCCCCGTAATTTTTTTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTg < 1:1210289/135‑1 (MQ=255)
cTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTCCGCCCGTGATTg > 5:936112/1‑140 (MQ=255)
ttCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCGATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTg > 2:1329870/1‑138 (MQ=255)
tctcGGCATAACAAACATCAGCGGAATAATAAACGGCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTgg < 1:581150/138‑1 (MQ=255)
ggCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATg > 4:1275176/1‑138 (MQ=255)
aaTAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTACGCGAt < 6:1159507/139‑1 (MQ=255)
aacaaacaTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTa > 5:330856/1‑140 (MQ=255)
caaacaGCTTCGGCTAAATCAACGGCCTGCCCGTCCATTTTATTACTTCCCACGACGCTATCGACGGGGTGTTCACGTAAATGTTGTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 7:323896/140‑1 (MQ=255)
aacaTCCGCGCCATAATAACCGTCCACCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 7:414130/140‑1 (MQ=255)
aacaTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 2:1029026/138‑1 (MQ=255)
aacaTCAGCGGAATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 2:725959/138‑1 (MQ=255)
aacaTCACCGCAATAATAAACGACAAGCCCCGCCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCATGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 1:20378/138‑1 (MQ=255)
aacaTCACCCTCATAATAAAGGTCCCGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 4:722048/138‑1 (MQ=255)
aaaaTCAGCGGCATAATAAACGTCCCGCCCCGGCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCg < 8:1112119/137‑1 (MQ=255)
aTCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGACCGTGATTGGTATGCGATTTAACCgg > 1:1147215/1‑138 (MQ=255)
cAGCGGAAAAATAAACGTCCACCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCa < 3:597817/138‑1 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACtt > 4:400969/1‑138 (MQ=255)
cGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTg > 8:949135/1‑140 (MQ=255)
gCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGTTTGGTATGCGATTTAACCGGCACtttt > 3:167663/1‑137 (MQ=255)
ccATAATAACCGTCCCGCCCCGCCTTTTTTTTAAAGCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGGATGCGATTTAACCGGCACTTTg < 1:477608/137‑1 (MQ=255)
ccATAATAAACGTCCACCCCCGCCATTTTATTAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTAAGCGATTTAACCGGCACTTTg < 3:319213/137‑1 (MQ=255)
caataataACCGTCCAGCCCGGGCTTTTTATTAAATCCAAAGACTCTATCGACTGGGTGTTCACGTAAATGTTTTTTCACCCAGGCAAAATATTCGGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTATg < 4:443321/136‑1 (MQ=255)
cttaataaACCGCCAGCCCGGGATTTTTATTAAAACCCACGACTCTAGCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:873979/138‑1 (MQ=255)
cATAATAACCGTCCAGCCCCGGATTTTTATTAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 7:1236444/140‑1 (MQ=255)
cATAATAACCGCCCCGCCCGGGATTTTTTTTAACTACCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 8:767004/140‑1 (MQ=255)
aataataAACGGCCAGCCCCGGCATTTTATTAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGa < 4:502861/137‑1 (MQ=255)
aataaaaAACTGCCCGCCCCGGCATTTTTTAAAAACCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:758997/139‑1 (MQ=255)
aaaaataaCCGCCCACCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATc < 5:1183648/137‑1 (MQ=255)
aataaCGGTCCTCCCCCGGTATTTATAAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 7:761481/140‑1 (MQ=255)
aataaCCGCCCGGCCCCGGATTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 4:1194108/138‑1 (MQ=255)
aataaACGTCCCGCCCCGCCATTTAATAAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGt < 5:201534/140‑1 (MQ=255)
aataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTGCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCa < 3:749012/138‑1 (MQ=255)
ataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 2:780998/1‑138 (MQ=255)
ataaACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAg > 4:670292/1‑138 (MQ=255)
aaCGTCCAGCCCCGTATTTTAATTAATTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTc < 2:1225282/138‑1 (MQ=255)
ccttCCAGCCCCGGCTTTTTATAAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 5:134739/137‑1 (MQ=255)
ccgcgcggCCCCGCAATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 5:617994/133‑1 (MQ=255)
ccGTCCCGCCCCGGCTTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa < 3:535691/137‑1 (MQ=255)
ccGTCCAGCCCGGTAATTTTTTAAAAACCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 5:263507/139‑1 (MQ=255)
acctCCCGCCCCGCCATTTTATAAAACCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGAGCCCGTGATTGGTATGCGATTTAACCGGCACTTTTATCAGTTCaaa < 8:1175075/137‑1 (MQ=255)
acctCCAGCCCAGGCTTTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCaaa < 7:717451/137‑1 (MQ=255)
aCGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa < 4:770426/138‑1 (MQ=255)
aCGTCCACCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCa < 2:974730/138‑1 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 6:174479/1‑140 (MQ=255)
gTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGAATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 8:313850/1‑140 (MQ=255)
ccAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc < 3:1211262/115‑1 (MQ=255)
ccAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAc > 4:1211262/1‑115 (MQ=255)
ccAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATa > 2:433721/1‑138 (MQ=255)
gCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAAACGGCACTTTGATCAGTTCAAATACAt > 4:559083/1‑138 (MQ=255)
gCCCCGGATTTTTATTAAATCCCACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCATGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACAt < 4:467392/138‑1 (MQ=255)
gCCCCGGAATTTTATTAAATCCAACGACTCTATCGACTGGGTGATAACGTAAATGTTTTTGCAACCAGGCAAAAAATTCCTAATTGCGCCCGGGATTTGTATGAGATTTAACCGGCACTTTGATAAGTTCAAATACAt > 3:709883/1‑138 (MQ=255)
cccccGGAATTTTATTAAATCACACGACTCTATCGACGGGGTGTTCACGTAAATGTTTATGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACAt < 1:1073099/137‑1 (MQ=255)
ccGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAg > 4:168935/1‑138 (MQ=255)
aaTTTTTTTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCAtt < 7:943036/139‑1 (MQ=255)
tttATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTc < 3:1129680/138‑1 (MQ=255)
taatacaaaCGCCTGTATCGACTGGGTGTTCTAGTAAAGGGTTTTGAACCCAGTCAAAATATTCCGCTTTGGGCCCGTTATTGGTATGCGATTTAACCGGCATTTTTATCAGTTCAAATACATCAGGGCATTGGCCTTcc < 6:405353/133‑1 (MQ=255)
aTCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTccc > 3:849086/1‑138 (MQ=255)
ccAACTACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCAc < 1:525670/138‑1 (MQ=255)
aaCGACTCTATCGCCGGGGTGTTCACGTATATGTTTTTGCACCCAGGAAAAATATTCCGCATTGCGCCCGTGTTTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAAAAAATCAGGGCATTCGCCTTCCCACGACt < 7:149634/140‑1 (MQ=255)
aaCGACTCTATCGACGGTGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGa < 1:951472/138‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAATTATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACt < 8:551918/140‑1 (MQ=255)
aaCGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGa < 1:1243757/138‑1 (MQ=255)
aaCGAATCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCAAGGCAAAATATTCCGAATTGCGCCCGTTATTGGTATGCGATTTAACCGGCACTTTGATCAGTTAAAATACATCAGGGCATTCGCCTTCCCACGa < 2:342104/138‑1 (MQ=255)
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AGGTTGCCCGCTCAAAGGCGGCATAATGGCGATAACGTGACGTCAGGCGATAGAAAAAGCCTTTCTCCTGCGCTACTTTCTCGGCATAACAAACATCAGCGGCATAATAAACGTCCAGCCCCGGCATTTTATTAAATCCAACGACTCTATCGACGGGGTGTTCACGTAAATGTTTTTGCACCCAGGCAAAATATTCCGCATTGCGCCCGTGATTGGTATGCGATTTAACCGGCACTTTGATCAGTTCAAATACATCAGGGCATTCGCCTTCCCACGACT > NZ_CP022686/2546284‑2546562
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
