Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A27 F2 I0 R1
|
73 |
6005.1 |
5484070 |
98.3% |
5390840 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,805,047 |
G→T |
18.4% |
pseudogene (328/934 nt) |
CIW80_RS09020 → |
nucleotidyl transferase AbiEii/AbiGii toxin family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,805,047 | 0 | G | T | 18.4%
| 180.2
/ 6.0
| 111 | pseudogene (328/934 nt) | CIW80_RS09020 | nucleotidyl transferase AbiEii/AbiGii toxin family protein |
| Reads supporting (aligned to +/- strand): ref base G (52/33); new base T (3/23); total (55/56) |
| Fisher's exact test for biased strand distribution p-value = 9.38e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 113 total aligned reads displayed.
AATGTCAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCA > NZ_CP022686/1804908‑1805173
|
aaTGTCAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTgg > 3:152134/1‑140 (MQ=255)
aaTGTCAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTgg > 1:527005/1‑140 (MQ=255)
aTGTCAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGa > 3:441128/1‑140 (MQ=255)
tGTCAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCACAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGAt > 4:634478/1‑140 (MQ=255)
cAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGGTGGGATAAt > 5:166148/1‑140 (MQ=255)
aagaTATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGaa > 3:403480/1‑140 (MQ=255)
aagaTATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTAGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGaa > 1:365255/1‑140 (MQ=255)
aagaTATTGATAAAAAGCTCATTCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAATAAAAATTCGCTAGGAAATCGTGCAAATAATAACGGATGTAATTCATAATTCTGACATTTTCAGCTTGGATAATGaa > 2:211195/1‑140 (MQ=255)
gaTATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGaa > 8:475924/1‑138 (MQ=255)
gaTATTGATATAAAGCTCGTGCCAACAGAGAACTGTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACAGTTTCAGCTTGGATAATGaaaa > 2:41296/1‑140 (MQ=255)
tatGATATAAATCTCGTGCCAACATATAAATTTATTCAAAATGGCAGATACAATATAAGAAAAATTCGCAATGAAAACGTTCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGATTGTATAATGAAAACGc < 6:6464/138‑1 (MQ=255)
atTGATATAAATCTCGTGCCAACAGAGAACTTTATGCAAAATGGCATAGACAAGAGAAGAAAAATTCGCAAGTAAATCGTGCAAATAATAACGGATGTTATTAATAATTCTGACATTTTCAGCTTGTATAATGAAAACGc > 4:400933/1‑140 (MQ=255)
atTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATATTCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGc > 1:405787/1‑140 (MQ=255)
atTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGc > 6:428969/1‑140 (MQ=255)
atTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGc > 2:628408/1‑140 (MQ=255)
ttGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGAAAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGcc < 2:319598/140‑1 (MQ=255)
tGATATAAAGCTAGTTCCAACAGACAACTTTAAGCAAAATGGCAGAGCCAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAAAAACGGATGTTATTCATAATTCTGACATTATCAGCTAGTATAATGACAACGc > 8:86338/1‑138 (MQ=255)
gATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCAGAATTCTGACATTTTCAGCTTGGATAATGATAACGcc > 7:534807/1‑138 (MQ=255)
ataAAGCTCGTGCCAAAATAGAACTTTATGCAAAATGGAAGAGACAAGATAATAAAAATTCGCAAGTAAATCTTGCAAATAATCAGGGATTTTATTAATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGtat < 2:276200/140‑1 (MQ=255)
taAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGta > 7:104242/1‑138 (MQ=255)
aaaGCTCTTGCCAAAAGATAACTTTATTAAAAATGGCAGATACAAGTTAAGAAAAATTGGAATGGAATTCGTGCAAATAATCAGGTTTGTTATTAATATTTCTTACTTTTTATGTTTGTATAATGAAAACGCCCGTATaa < 6:65842/140‑1 (MQ=255)
aaaGCTCGTGCCAACAGATAAATTTATGAAAAATGGCAGAGACAAGATAAGAAAATTTCGCAAGGAAATCGTGCAAATAATCACGGATGTTAATCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATaa < 6:293080/140‑1 (MQ=255)
gCTGGTGCCAACAGTCAACTTTATGCAAAATGGAAGACAAAATAGAAGAAAAATTCGCAAGTAAATCGGGCAAATAATCAGGGTTGTTATTCATAATTCTGACATTTTCAGCTTGTATAATGAAAACGCCCGTATAacac < 3:358718/140‑1 (MQ=255)
gCTCGTGCCAACCGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAACTCGTGCAAATAATCACGGATGTTATTCATAATTCTGCCATTTTCAGCTTGGATAATGAAAACGCCCGTATAac > 7:551725/1‑138 (MQ=255)
gCTCGTGCCAACAGATAACTTTATGCAAAATGGCAGAGACAAGATAATAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATTTTATTCATAATTCTGACATTTTCAGCTTGTATAATGAAAACGCCCGTATAac < 7:156719/138‑1 (MQ=255)
cGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGtg > 2:122300/1‑140 (MQ=255)
cGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGtg > 4:80219/1‑140 (MQ=255)
cGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATAACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGtg > 3:591204/1‑140 (MQ=255)
cGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTAGCAAGGAAATCGTGCAAATAATCAAGGATGTTATTTATAATTCTGACATATTCAGCTTGTATAATGAAAACGACAGTATAACACGtg > 3:656380/1‑140 (MQ=255)
tGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAACCGCCCGTATAACACGtg > 8:600226/1‑138 (MQ=255)
tGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACgct > 7:98485/1‑136 (MQ=255)
tGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACTtgat > 2:350485/1‑140 (MQ=255)
tGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGtgat > 6:621808/1‑140 (MQ=255)
tGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGtg > 7:352495/1‑138 (MQ=255)
tGCCAACACAAAACTTTATGCAAATTGCCAGATACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCCCGGATGTTATTCATAATTATCAAATTTTCAGCTTGTATAATTAAAACGCCCGTATAACACGtgat < 4:304273/140‑1 (MQ=255)
ggCCACCAGACAAATTTATGAAAAATGGCACTCACAAGAGAAGAAAAATTCGCAAGTAAATCGTGCAAATAATCCGGGATTTTATTCATAATTCTTAAATTTTCTGCTTGTATAATTAACACGCCCGTATAACACGtgat < 2:110644/139‑1 (MQ=255)
gCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAACACGCCCGTATACCACGtga > 8:340697/1‑138 (MQ=255)
gCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAAAAATCACGGAAGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACTCCCTTATAACACGtga > 8:545114/1‑138 (MQ=255)
aaCTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGt > 7:347216/1‑138 (MQ=255)
aaCTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTta > 6:577271/1‑140 (MQ=255)
cTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTta > 8:27726/1‑138 (MQ=255)
ttATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAAc > 1:373213/1‑140 (MQ=255)
tGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACg > 7:219555/1‑138 (MQ=255)
aaaaaTGGCAGAGACAAGAGAATAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAAt < 4:262029/139‑1 (MQ=255)
aaTGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAAtctc > 4:647403/1‑140 (MQ=255)
aaTGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAAtctc > 3:259169/1‑140 (MQ=255)
aaTGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAAtctc > 5:68750/1‑140 (MQ=255)
aaTGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAAtctc > 2:490590/1‑140 (MQ=255)
aaTGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGGTATAACGAAAtctc > 6:472361/1‑140 (MQ=255)
aaTGCCAGATACAAGAGAATAAAAATTCGCAAGGAAAGCGTCCAAATAAACCCGGATGTTATACATAATTCTGACATTTTCAGCGTGTATAATCAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAAtc < 7:299684/138‑1 (MQ=255)
aTGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCg > 5:172949/1‑140 (MQ=255)
ggCATATACAATATAAGAAAAATTCGCAAGTAAATCGTGCAAATAATCACGTATGTTATTCATAATTCTGACATTTTCAGCTTGTATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGt < 3:14345/140‑1 (MQ=255)
ggCAGAGACAAGAGAAGAAAAATTCGCAAGCAAATCGTGAAAATAATCACGGATGTTATTCATAATTCTGAAATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCg < 7:635291/138‑1 (MQ=255)
agatACAAGATAATAAAAATTCGCAAGGAAATCTGTCAAATATTCACGGATGTTATTAATAATGCTTAAATTTTCAGCTTGGATAATGAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACg < 6:82806/140‑1 (MQ=255)
cgaCAATCGAACAAAAATTCGCAAGGAAATCGTGAAAATAATCACGCATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGtt < 4:103108/139‑1 (MQ=255)
agccacgagaAGAAAAATTCGCAAGTATTTCGTGCAAATATTCAGGGATGTTATTCATATTTTTGAAATTTTCTGCTTGGATAATGAAAAAGCACGTATTACACGTGATGAGTATAGTTATAACGAAATCTCGGTACg < 7:547429/132‑1 (MQ=255)
acacaacaGAATAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCCGCTTGTATAATTAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGtt < 5:32131/138‑1 (MQ=255)
gaagaaAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATcccc > 8:294071/1‑138 (MQ=255)
ataaaaaTTCCCAATTAAATCGTGAAAAAAATCACTGTCGTATTTTAAAATGCTGACATTTTCAGCTTGTATAATGAAAACGCCCGTATAACACGTTATGTGTATAGTTATAACGAAATCTGGGTACGTTATCCCCAg < 8:374185/136‑1 (MQ=255)
agaaAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTAATAATTCTTACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAg < 8:618770/138‑1 (MQ=255)
aaaaTTCGCAAGTAATTCGTGCAAATAATCACGTATGTTATTCATAATTCTTAAATTTTCAGCTTGTATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACAtt < 2:175547/140‑1 (MQ=255)
aaaaTTCGAAAGTAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGAAAAGGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACAtt < 3:152614/140‑1 (MQ=255)
aaaTTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCTGCTTGGATAATGAACACGCCCGTATAACACGTGAGGAGTATCGTTATATCGAATTCTCGGTTCGTTATCCGCGGACAt > 8:428574/1‑138 (MQ=255)
ttCGCAAGGAAATCGTCCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGca < 3:432342/140‑1 (MQ=255)
ttCCCACGGAAATCGTGCAAATAATCACTGATGTTATTCATACTTCTGACATTTTCAGATTGGATTATGAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGGACGTTATCCCCAGACATTTGca < 4:396707/140‑1 (MQ=255)
cGCAAGTAAATCGTCAAAATAATCACGTATGTTATTCAAAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGcaca < 6:358275/140‑1 (MQ=255)
taaaTCGTGCAAATAATCACGGATTTTATTCATAATTCGGAAATTTTCAGCTTGGATAATTAAAACGCCCGTATAAAACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTc < 7:475924/137‑1 (MQ=255)
gataTCGTTCAAATACTCCAGGATGTTATTCATAATTCTGAACTTTTCTGCTGGGCTACTGAAAACGCCCGTATAACACGTGATGAGTATCGTTATACCGAAATCTCGGTACGGTATCCCCAGACATTTGCACAAGTc < 8:269980/135‑1 (MQ=255)
gAAATCGTGCAAATAATCACGTATGTTATTCATAATTCTTACATTTTAAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCTGTACGTTATCCCCAGACATTTGCACAAGTccc < 6:333565/140‑1 (MQ=255)
caaaTCGTGCAAAAAAACACGGATGTTATTCATATTTCTGACATTTTCAGCTTGTATATTGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTccc < 4:42966/139‑1 (MQ=255)
ataatCATGTATGTTATTCATAATTCTGACTTTTTATGCTTGTATAATTAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGt < 7:551785/138‑1 (MQ=255)
aaatCACGGATGTTATTCTTAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCa < 3:353104/139‑1 (MQ=255)
acgcttGTTATTCAAATTTCTTCAATTTTCAGCTTGGATAATTAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACTAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATttat < 1:204868/135‑1 (MQ=255)
aCGGATGTTATTCATAATTCTGAAATTTTCAGCTTGTATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATttat < 4:616785/140‑1 (MQ=255)
cGGATGTTATTCAAAATTCTGCAATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATttatt < 4:539540/140‑1 (MQ=255)
tttATTCATAATTCTGACATTTTCAGATTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCt < 2:247576/139‑1 (MQ=255)
gTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTcc > 4:647442/1‑128 (MQ=255)
gTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCt > 4:64575/1‑140 (MQ=255)
ttATTCATAATTATGACATTTTCAGCGTGGTTAATGAAAACGCCCGTATAACACGTGATGAGTATCGTAATAACGAAATCTCGGTACGTTATCCCCAGACATTTCCACAAGTCCCCTGTCTTCGTCCATTTATTaatc > 8:452490/1‑136 (MQ=255)
tATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCt > 7:306223/1‑138 (MQ=255)
aTTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGa > 4:245412/1‑140 (MQ=255)
ttaaTAATTCTGACATTTTCAGCTTGTATAATTAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTgg < 7:75283/135‑1 (MQ=255)
ttCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGGGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCAATTATTAAGCTgg > 8:111165/1‑138 (MQ=255)
taaTAATTCTGACTTTTTCAGCTTGTATAATCAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGa < 8:564144/136‑1 (MQ=255)
aTAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTg < 5:621808/140‑1 (MQ=255)
aaTTCTGACATTTTCAGCTTGGATAATGAACACGCCCGTATAACACGTGATGAGTATCGGTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGAt < 2:546934/140‑1 (MQ=255)
aaTTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGAt > 5:438151/1‑140 (MQ=255)
aTTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCATGTCTTCGTCCATTTATTAAGCTGGAGTTGATg > 2:190695/1‑140 (MQ=255)
ttCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGAt > 8:311084/1‑138 (MQ=255)
tGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTGCGTCCATTTATTAAGCTGGAGTTGATGGaaa > 1:181135/1‑140 (MQ=255)
aCATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGc > 2:507299/1‑140 (MQ=255)
ctttatCAGCTTGGATAATGAACACGCCCGTATAACACGTTATGAGTATCGGTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCa < 6:296945/135‑1 (MQ=255)
cATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATTGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCa < 2:677852/140‑1 (MQ=255)
atttttCTGCTTTGATAATTAAAACGCACGTATTACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCACCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGTAGTTGATGGAAAGCa < 6:140286/138‑1 (MQ=255)
aaTTTTCAGCTTGTATATTGAACACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCa < 6:68750/139‑1 (MQ=255)
aaTTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCa < 4:587389/139‑1 (MQ=255)
aaTTTTCAGCTTGGATAATGAAAAAGCCCGTAGAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCa < 5:44217/139‑1 (MQ=255)
aaTTTTAAGCTTGTATACTTAAAACGACCTTATAACACGTGATGAGTATCGTTATAAAGAAATCTCTGTACGTTATCCCCAGACATTTTCACAAGTCCCCTTTCTTCGTCCATTTATTTATCTGGAGTTGATGGAAAGCa < 5:44216/139‑1 (MQ=255)
aTTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGc > 8:521677/1‑138 (MQ=255)
ttttCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCa < 7:310862/138‑1 (MQ=255)
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AATGTCAGAAGATATTGATATAAAGCTCGTGCCAACAGAGAACTTTATGCAAAATGGCAGAGACAAGAGAAGAAAAATTCGCAAGGAAATCGTGCAAATAATCACGGATGTTATTCATAATTCTGACATTTTCAGCTTGGATAATGAAAACGCCCGTATAACACGTGATGAGTATCGTTATAACGAAATCTCGGTACGTTATCCCCAGACATTTGCACAAGTCCCCTGTCTTCGTCCATTTATTAAGCTGGAGTTGATGGAAAGCA > NZ_CP022686/1804908‑1805173
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
