Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,833,745 |
T→G |
23.3% |
N468H (AAC→CAC) |
gspD ← |
type II secretion system secretin GspD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,833,745 | 0 | T | G | 23.3%
| 296.6
/ 35.4
| 197 | N468H (AAC→CAC) | gspD | type II secretion system secretin GspD |
| Reads supporting (aligned to +/- strand): ref base T (51/96); new base G (48/2); total (99/98) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 215 total aligned reads displayed.
TATTGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACT > NZ_CP022686/1833607‑1833883
|
ttGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACAATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGttttt > 7:36702/1‑140 (MQ=255)
tGAAAGGATTGCTGTTAGTAGAGCCAACAGTAGAGCCGGGTAATACCGGACCGTCCTGGCCCCCCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGTTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGtttttt > 4:817582/1‑139 (MQ=255)
gAAAGGATTGCTGTTATTCGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 2:204832/140‑1 (MQ=255)
gAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGATCACGTTCGAGCTGGAGTCGttttt > 6:361140/1‑138 (MQ=255)
gAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGttttt < 6:455296/138‑1 (MQ=255)
gAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGa < 7:226521/140‑1 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGCGCACGTTCGAGCTGGAGTCGtgtttttc > 7:393065/1‑137 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGtttttttc > 1:871829/1‑137 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGttttttaa > 1:52142/1‑137 (MQ=255)
aaaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTAc > 2:283577/1‑140 (MQ=255)
aaGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGAcc < 8:272609/140‑1 (MQ=255)
aGGATTGCTGTTATTAGAGCAAACAGTAGAGCCGGTTAATACCTGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCTTGGAGATCACGTTCGATCTGGAGTAgttgttttacg > 1:642618/1‑135 (MQ=255)
gATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGcc < 1:237231/140‑1 (MQ=255)
ttGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGCCCGccag > 4:1119836/1‑138 (MQ=255)
cTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGt > 6:552213/1‑138 (MQ=255)
cTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTAc < 7:511391/140‑1 (MQ=255)
ttattaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAg < 4:509908/140‑1 (MQ=255)
tttaGACCCAACAGTTGAGCCGGTTAATAGCGGAAGGTCCTGGCCCACCATGAAGAAGGATTCCTGGTTGTCGAGCGTGGTGATACTCGGCGTGGTGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAg < 6:503525/137‑1 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAgcg < 4:858483/140‑1 (MQ=255)
attaGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGGTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAg < 5:97665/138‑1 (MQ=255)
actaGAGCCACCAGTAGAGCCGGTTTCTACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGGGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAgcg < 2:745175/138‑1 (MQ=255)
taGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGTCCCCCTGTACCAgcc > 6:228302/1‑137 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCGGTACCCGCGCCagc > 7:910915/1‑138 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGTCCGCCGGTTCCAACGCCaac > 1:708319/1‑138 (MQ=255)
agCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGGTTGGCCGCCAGTTCCCGCGcccta > 8:845497/1‑137 (MQ=255)
gCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATcc > 2:84114/1‑140 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCa < 5:770072/138‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCa < 5:674290/138‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 3:595589/140‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 7:769631/140‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 8:181929/140‑1 (MQ=255)
aaCAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 8:336006/140‑1 (MQ=255)
aaCAGTAGAGCCCGTTAAAACCGGAACGTCCTGGCCCACGATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGATAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 1:844461/140‑1 (MQ=255)
aaCAGTAGAGACGGTAAATACCGGAACGTCCTGGGCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGt < 2:546711/140‑1 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCGGTTCCCGCGCCATCCAGtgg > 7:834666/1‑138 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTAACGCCAGTACCAGCGCCATCCAGtag > 4:544874/1‑138 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTAACCCCTCTACCCCCGCCCGACAGTCg > 8:1033562/1‑140 (MQ=255)
cAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTATCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTCACGCCAGTACCAGCGCCATCCAGTCg > 8:47737/1‑140 (MQ=255)
tAGAGCCGGTTAATACCGGAACGGCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCt < 8:371496/140‑1 (MQ=255)
ccGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCAGTACCAGCCCCATCCAGGCGCCTTTaac > 2:109087/1‑140 (MQ=255)
ccGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCGCCAGTACCCGCGCCATCCAGTCGCCgttgcc > 3:963460/1‑137 (MQ=255)
ccGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGGTTTAGCGCCGGTAACCGCCCCCTCCACGCGcccgtgac > 3:455143/1‑134 (MQ=255)
cgcgtaataaCGGAACGTCCTGGCACACCATGAAGAAGGAATCCTGGTTCTCCAGCGTTGTGATACTCTGCGTGGAGAGCACGTTCGAGATGGTGTCGTTTTTGACCGCATGTACCAGCGCCATCCAGTCGCCTTTcacc < 8:1123008/136‑1 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTCCCGCCGGTACCAGCGCCATCCCGTCGCCGTTcaccac > 8:288491/1‑140 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTACCATCGCCATCCAGTCGCCTTTcaccac > 8:786643/1‑140 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCGGTACCCGCGCCCACCCGAGGCCGTTcacccc > 8:423592/1‑138 (MQ=255)
gTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCGCCAGTACCCGCGCCCTCCAGGCGCCGTTaaccac > 2:177050/1‑140 (MQ=255)
aaTACCGGAACTTCCTGGCCCAACATGAAGAAGGCTTCATGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACg < 6:1126249/138‑1 (MQ=255)
aaTACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACg < 5:950701/138‑1 (MQ=255)
aaTACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGc‑c < 7:125113/140‑1 (MQ=255)
aaTACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGc‑c < 2:97748/140‑1 (MQ=255)
aaTACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGGGGTGATACTCGGCGTGGAGAGCACGTGCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGc‑c < 3:301014/140‑1 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGtt > 8:588806/1‑88 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGtt < 7:588806/88‑1 (MQ=255)
gAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCGGGACCAGCGCCCTCCAGTGGCCGTTCACCCCGC‑CCAccgcc > 8:691871/1‑140 (MQ=255)
tCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGTCCGCCGGTTCCCGCGCCAACCCTTCGCCTTTACCCCCCC‑CACCCCCCGGAcc > 1:1165567/1‑140 (MQ=255)
tCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCTGTTACCCCGCCATCCAGTCGCCGTTCACCACGC‑CAACCCCCCTAcc > 4:161485/1‑140 (MQ=255)
gggCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGGTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCg < 5:85211/137‑1 (MQ=255)
caccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGGGATACTCGGGGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGc < 8:533691/140‑1 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGCGCTGGAGTCGTGTTTTTCCGCCAGTACCAGCCCCAACCCGTCGCCAATAACAACGC‑CAACCGCCCAACCGCTAAATccg > 4:464373/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTAc > 3:1046403/1‑88 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTGTTGACCGCCAGTACCAGCGCCCACCCCTCGCCTTTGACCCCCC‑CAACCCCCGGACCCCGAAAGCCa > 2:416525/1‑140 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTAGCCCCCGGACCCGCGCCCTCCAGGCGCCCTTCACCCCCC‑CCCCCCCCGGACCGCGAAAcccc > 3:504795/1‑139 (MQ=255)
ccaTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCGGTACCAGCGCCATCCAGGCGCCGGTCACCACCC‑CCACCCCCGTACCGCTAAAGccc > 4:344401/1‑139 (MQ=255)
caTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCGGTACCAGCGCCAGCCACTCGCCGGTCACCACGC‑CCCCCGCCGTGACCCGAAAGCCac > 7:356539/1‑139 (MQ=255)
aTGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCaga < 8:435010/140‑1 (MQ=255)
gaagaaGGCTGCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGGCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCagaaa < 3:1228744/140‑1 (MQ=255)
aagGCTTCCTGGTTGTCCAGCGTGGGGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAaagaag < 4:752143/140‑1 (MQ=255)
ggCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGGCGCCTTTCACCCCGC‑CAACCGCCGTTCCGCTAAAGCCAGAAAGAAGCt > 4:1173940/1‑140 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCTGTACCCACGCCATCCAGTCGCCGTTAACCACGC‑CCACCGCCGTACCGCGAAAGCCagaaagactctg > 2:901523/1‑135 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTTACCGCCGGTACCCGCGCCCTCCCGTACCCGTTTACCCCGC‑CAACCCCCGGAACCCGAAAACCACAAAAAAACTg > 3:178830/1‑140 (MQ=255)
gCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTTCCGCCTGTACCAGCGCCATCCAGTCGCCGTTCACCCCCC‑CACCCCCCCTTCCCCAAAAGCCAAAAATAAGcag > 3:559469/1‑138 (MQ=255)
ttCCTGGTTGTCCTGCGTGGTGATACTCGGCGTGGAGAGCACGTGCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTg < 5:280889/138‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 2:1204370/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 3:871162/140‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTg < 5:552213/138‑1 (MQ=255)
ttCCTGGTTGTCCAGCGTGGTGATACTCGGCGGGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCCGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgag < 8:1093263/140‑1 (MQ=255)
ttCCTGGGTGTCCCGGGTGGGGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTg < 5:1082157/138‑1 (MQ=255)
ttCCGGTTTGTCCAGCGTGTTGAATCTCGGCTTGGTGAGCTCGTTCGAGCTGGAGTCGTTTTTGAGCGGCTGTTCCAGCTCCATGCATTCTGCTTTCTCCAGGT‑GTACCGGGGTACCGCTCTTGCGAGAAAGTAGGTgtg < 4:687532/140‑3 (MQ=255)
ccTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTGGCCGCCGGTTCCCGCGCCCTCCAGTCGCCCTTCACCACGC‑CCACCCCCGGAACGCGAAAGCCAGAAAGAACCGgagcg > 3:84345/1‑140 (MQ=255)
cTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcga < 2:494668/140‑1 (MQ=255)
ttGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGGTCGAGCGGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCCCGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTgagcgagc < 6:761810/138‑1 (MQ=255)
tCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCGCCTGTACCAGCGCCAACCCGTGGCCGGTAACCCCGC‑CAACCGCCGTACCCCGAAAACCCGAAACAAGCAGCGCGCGCggggg > 1:362096/1‑139 (MQ=255)
cGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTACCGCCGGGAACCCCGCCCTCCAGTCGCCTATAAACACGCACAACC‑CCCTACCCCAAAAACCCCAAATAAACAGAGCGAGGGTGgagtcat > 8:831666/1‑136 (MQ=255)
tggtgATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGGCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCCCGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCg < 1:501739/140‑1 (MQ=255)
gATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGt < 8:897914/140‑1 (MQ=255)
gATACTCGGCGGGGAGAGCCCGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGGGGAGTGATCGCCGt < 4:913498/140‑1 (MQ=255)
cTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGGCCGCCGGTTCCCGCGCCATCCAGTCGCCGTTAACCACGC‑CCACCCCCGGCACGCGAAAGCCCGAAAGAAGCTGGGGGAGCGTGGCGAGGTGGCCggtttt > 4:526766/1‑135 (MQ=255)
ggCGTGGAGAGCTGGTTCGAGCTTGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCTTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 8:225872/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 8:686102/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 4:236875/140‑1 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGTCGTGTTTTGCCGGCAGTAACAGCCCCATACCCTCGCCCTTCACCACGC‑CCACCGCCCTACCCCCTAAGCCAGAAATAAGCAGAGCGCGCGGGGGGCGATCGACGGTAGTAta > 2:311190/1‑139 (MQ=255)
ggCGTGGAGAGCACGTTCGAGCTGGAGGCGTTTTTGCCCGCCTGTACCAGCGCCATCCAGTCGCCTTTCCCCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATc < 4:938872/140‑1 (MQ=255)
ggCGTGGAGAGCACGTGCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGCGGAGAGATCGCCGTTAGTa < 5:360483/138‑1 (MQ=255)
gagaGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGtt < 3:679269/140‑1 (MQ=255)
gagaGCACGTTCGAGCTGGAGTCGTGTTTGTCCGCCTGTACCAGCGCCCTCCACTCGCCGTTGACCCCCC‑CAACCCCCGTACCCCGAAAGCCAGAAAGCAGCTGAGCGGGGGTGGTGAGATCGCCGTTTGTATCCggg > 6:1049735/1‑138 (MQ=255)
agCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAAt < 7:1102726/140‑1 (MQ=255)
gTTCGAGCTGGATTCGTTTTTGACCGCCAGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCAGTGTTAAtggtgg < 1:1000984/140‑1 (MQ=255)
gAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAgc < 7:686295/140‑1 (MQ=255)
gTCGTGTTTGACCGACTGAACCATCGCCATCCCGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCAAGAAAGAAGCTGTGCGAGCGTGGAGAGATCGCCGTTAGGATCCGTTTTATTGGTTGTAGCGCCGtttt < 4:997199/140‑1 (MQ=255)
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TATTGAAAGGATTGCTGTTATTAGAGCCAACAGTAGAGCCGGTTAATACCGGAACGTCCTGGCCCACCATGAAGAAGGCTTCCTGGTTGTCCAGCGTGGTGATACTCGGCGTGGAGAGCACGTTCGAGCTGGAGTCGTTTTTGACCGCCTGTACCAGCGCCATCCAGTCGCCTTTCACCACGC‑CAACCGCCGTACCGCTAAAGCCAGAAAGAAGCTGAGCGAGCGTGGAGAGATCGCCGTTAGTATCCGGGTTAATGGTGGTAGCGCCGTTTTCACT > NZ_CP022686/1833607‑1833883
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
