Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F3 I160 R1 220 104.1 6051714 95.9% 5803593 84.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,659,576 T→C F14S (TTC→TCC)  clcB → voltage‑gated ClC‑type chloride channel ClcB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,659,5760TC100.0% 215.8 / NA 58F14S (TTC→TCC) clcBvoltage‑gated ClC‑type chloride channel ClcB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/23);  total (35/23)

CTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGT  >  NZ_CP009273/1659489‑1659662
                                                                                       |                                                                                      
ctTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTccc                                                                                      <  1:2156005/90‑1 (MQ=255)
     gCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGt                                                                                 >  1:2095841/1‑90 (MQ=255)
      ccGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTc                                                                                <  2:918887/90‑1 (MQ=255)
      ccGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTc                                                                                <  2:2323735/90‑1 (MQ=255)
         cAAAATAGTCGCCCGTGTTTCATTGCCTATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGc                                                                             <  2:2709437/90‑1 (MQ=255)
          aaaaTAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCt                                                                            >  2:617110/1‑90 (MQ=255)
           aaaTAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCtt                                                                           <  2:77077/90‑1 (MQ=255)
                  cGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCaa                                                                    <  2:1836148/90‑1 (MQ=255)
                   gCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAAc                                                                   <  2:912132/90‑1 (MQ=255)
                   gCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAAc                                                                   <  1:15797/90‑1 (MQ=255)
                     ccGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAg                                                                 >  1:2539298/1‑90 (MQ=255)
                       gtgtTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAgtc                                                               <  2:679450/90‑1 (MQ=255)
                       gtgtTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAgtc                                                               >  1:2353312/1‑90 (MQ=255)
                              aTTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTa                                                        >  2:287483/1‑90 (MQ=255)
                                 gCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATtc                                                     >  1:2655918/1‑90 (MQ=255)
                                    cATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTcg                                                  <  1:1017799/90‑1 (MQ=255)
                                           gCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCtt                                           >  2:607205/1‑90 (MQ=255)
                                           gCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCtt                                           >  2:1666741/1‑90 (MQ=255)
                                           gCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCtt                                           >  2:1533420/1‑90 (MQ=255)
                                           gCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCtt                                           >  1:135965/1‑90 (MQ=255)
                                                tGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAgtcg                                                              >  2:171765/1‑66 (MQ=255)
                                                tGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAgtcg                                                              <  1:171765/66‑1 (MQ=255)
                                                tGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTttgccg                                      >  2:912903/1‑90 (MQ=255)
                                                 gCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTttgccgt                                     <  1:1653412/90‑1 (MQ=255)
                                                     catcTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTttgccgttgcc                                 >  1:2636499/1‑90 (MQ=255)
                                                        cTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCggg                              >  2:872012/1‑90 (MQ=255)
                                                           cacaTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGttt                           <  1:234235/90‑1 (MQ=255)
                                                           cacaTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGttt                           <  2:1086562/90‑1 (MQ=255)
                                                            acaTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGGATTCTCGCGTCCTTTGCCGTTGCCGGGTTTc                          >  2:2807282/1‑90 (MQ=255)
                                                             caTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCg                         >  1:1505830/1‑90 (MQ=255)
                                                             caTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCg                         >  2:674001/1‑90 (MQ=255)
                                                             caTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCg                         >  1:1431030/1‑90 (MQ=255)
                                                              aTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAAc                                                                   >  2:478064/1‑47 (MQ=255)
                                                              aTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAAc                                                                   <  1:478064/47‑1 (MQ=255)
                                                              aTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGt                        >  2:836698/1‑90 (MQ=255)
                                                              aTCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGt                        >  2:119382/1‑90 (MQ=255)
                                                               tCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTc                       >  1:2700649/1‑90 (MQ=255)
                                                               tCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTc                       >  1:905314/1‑90 (MQ=255)
                                                               tCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTc                       >  1:702679/1‑90 (MQ=255)
                                                                cTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCa                      >  2:2649063/1‑90 (MQ=255)
                                                                 tATCCGGATCTGCGCACTATGTCCCACCTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATg                    >  2:2917722/1‑90 (MQ=255)
                                                                  aTCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATg                    >  1:153136/1‑90 (MQ=255)
                                                                  aTCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATg                    >  1:2145283/1‑90 (MQ=255)
                                                                       gATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGAtg               >  1:2745964/1‑90 (MQ=255)
                                                                       gATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGAtg               <  1:2584690/90‑1 (MQ=255)
                                                                         tCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGAtgct             <  2:407822/90‑1 (MQ=255)
                                                                         tCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGAtgct             <  1:2209402/90‑1 (MQ=255)
                                                                         tCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGAtgct             <  1:674001/90‑1 (MQ=255)
                                                                            gcgcACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCggg                              <  2:1604698/70‑1 (MQ=255)
                                                                            gcgcACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCggg                              >  1:1604698/1‑70 (MQ=255)
                                                                            gcgcACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATgctgct          >  2:1274260/1‑90 (MQ=255)
                                                                            gcgcACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATgctgct          >  1:2902849/1‑90 (MQ=255)
                                                                            gcgcACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGCATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATgctgct          >  1:2056902/1‑90 (MQ=255)
                                                                               cACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACt       <  2:856529/90‑1 (MQ=255)
                                                                               cACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACt       <  1:2994148/90‑1 (MQ=255)
                                                                                   aTGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAg   <  2:2700649/90‑1 (MQ=255)
                                                                                   aTGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAg   >  2:2113151/1‑90 (MQ=255)
                                                                                   aTGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAg   >  1:642326/1‑90 (MQ=255)
                                                                                    tGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGt  <  1:887502/90‑1 (MQ=255)
                                                                                       |                                                                                      
CTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGT  >  NZ_CP009273/1659489‑1659662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGTTGTTCCT  >  NZ_CP009273/1659479‑1659672
                                                                                                 |                                                                                                
CGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCC                                                                                                <  SRR3722030.1378197/100‑1 (MQ=60)
CGGCTGGCCTCTTTTGCCGCAAAATAGCCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCCTCATCTCCCCATCTCTCCGCATCTGCGCACTACGTCCC                                                                                                <  SRR3722030.2951182/100‑1 (MQ=60)
  GCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCAC                                                                                              <  SRR3722030.1917494/100‑1 (MQ=60)
  GCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCAC                                                                                              <  SRR3722030.2675281/100‑1 (MQ=60)
    caccgagatctacactggccatgtcgtcggcagcgtcagatgtgtataagagacaGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCG                                                                                            <  SRR3722030.2687909/45‑1 (MQ=60)
    TGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCG                                                                                            <  SRR3722030.1213831/100‑1 (MQ=60)
     GGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGT                                                                                           >  SRR3722030.2133171/1‑100 (MQ=60)
         TCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGC                                                                                       <  SRR3722030.3050523/100‑1 (MQ=60)
          CTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCT                                                                                      <  SRR3722030.2194628/100‑1 (MQ=60)
                     AAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAG                                                                           >  SRR3722030.2585808/1‑100 (MQ=60)
                       ATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTC                                                                         >  SRR3722030.2396085/1‑100 (MQ=60)
                             tcgtcggcagcgtcagatgtgtataagagacagTCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGT                                                                   <  SRR3722030.485352/67‑1 (MQ=60)
                             GCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGT                                                                   <  SRR3722030.16061/100‑1 (MQ=60)
                                GGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGctgtctcttatacacatctgacgctgcc                                                                >  SRR3722030.733882/1‑72 (MQ=60)
                                 GTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTC                                                               >  SRR3722030.2704827/1‑100 (MQ=60)
                                  tgtataagagacagTTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCT                                                              <  SRR3722030.174248/86‑1 (MQ=60)
                                         gatctacactggccatgtcgtcggcagcgtcagatgtgtataagagacagCTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCC                                                       <  SRR3722030.165317/50‑1 (MQ=60)
                                           GCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGctgtctcttatacacatctgacgctgccgacgacatggc                                                     >  SRR3722030.1244810/1‑61 (MQ=60)
                                           GCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTT                                                     >  SRR3722030.137932/1‑100 (MQ=60)
                                              CATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGC                                                  <  SRR3722030.1033177/100‑1 (MQ=60)
                                                     GCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCC                                           >  SRR3722030.2685027/1‑100 (MQ=60)
                                                           GCATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTT                                     <  SRR3722030.1680250/100‑1 (MQ=60)
                                                             ATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCG                                   >  SRR3722030.1530044/1‑100 (MQ=60)
                                                             ATCATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCG                                   >  SRR3722030.1453705/1‑100 (MQ=60)
                                                               CATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTC                                 >  SRR3722030.919212/1‑100 (MQ=60)
                                                               CATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTC                                 >  SRR3722030.2750514/1‑100 (MQ=60)
                                                               CATCTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTC                                 >  SRR3722030.713536/1‑100 (MQ=60)
                                                                 TCTACACATCTATCCGGATCTGCGCACTATGTCCCACCtgtctcttatacacatctgacgctgccgacgacatggccagtgtagatctcggtggtcgccg                               >  SRR3722030.1619064/1‑38 (MQ=60)
                                                                  CTACACATCTATCCGGATCTGCGCACTATGTCCCACCtgtctcttatacacatctgacgctgccgacgacatggccagtgtagatctcggtggtcgccgt                              >  SRR3722030.384590/1‑37 (MQ=60)
                                                                  CTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATG                              >  SRR3722030.2183654/1‑100 (MQ=60)
                                                                  CTACACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATG                              >  SRR3722030.155344/1‑100 (MQ=60)
                                                                     CACATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGA                           <  SRR3722030.237586/100‑1 (MQ=60)
                                                                       CATCTATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATG                         >  SRR3722030.2796667/1‑100 (MQ=60)
                                                                            ATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCtgtctctta                    >  SRR3722030.1630720/1‑91 (MQ=60)
                                                                            ATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCT                    >  SRR3722030.2956385/1‑100 (MQ=60)
                                                                            ATCCGGATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGCATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCT                    >  SRR3722030.2093374/1‑100 (MQ=60)
                                                                                 GATCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGG               <  SRR3722030.2632101/100‑1 (MQ=60)
                                                                                   gacagGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAG             <  SRR3722030.475964/95‑1 (MQ=60)
                                                                                   TCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAG             <  SRR3722030.2249160/100‑1 (MQ=60)
                                                                                   TCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAG             <  SRR3722030.684436/100‑1 (MQ=60)
                                                                                   TCTGCGCACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAG             >  SRR3722030.652286/1‑100 (MQ=60)
                                                                                      GCTCACTATGTCCCACCGTCTGCTTATCTCAACAGTCGTCGGTATTCTCGCGGCCTTTACCGTTCCCGGGTTTCGTCCTGCGATGCTGCTACTGGAGTGG          >  SRR3722030.2501457/1‑100 (MQ=60)
                                                                                         CACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGTTG       <  SRR3722030.3049296/100‑1 (MQ=60)
                                                                                         CACTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATACGATGCTGCTACTGGAGTGGTTG       >  SRR3722030.1003865/1‑100 (MQ=60)
                                                                                           CTATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGTTGTT     >  SRR3722030.1144993/1‑100 (MQ=60)
                                                                                             ATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCctgtctcttatacacatctgacgctgccgacga   >  SRR3722030.647660/1‑67 (MQ=60)
                                                                                             ATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGGGATGCTGCTACTGGAGTGGTTGTTCC   >  SRR3722030.3013134/1‑100 (MQ=60)
                                                                                             ATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGctgtctcttata   >  SRR3722030.2784197/1‑88 (MQ=60)
                                                                                             ATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGctgtctc   >  SRR3722030.2134879/1‑93 (MQ=60)
                                                                                             ATGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGTTGTTCC   >  SRR3722030.2965313/1‑100 (MQ=60)
                                                                                              TGTCCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGTTGTTCCT  <  SRR3722030.901114/100‑1 (MQ=60)
                                                                                                 |                                                                                                
CGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTTGCCGGGTTTCGTCATGCGATGCTGCTACTGGAGTGGTTGTTCCT  >  NZ_CP009273/1659479‑1659672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: