Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F5 I97 R1
|
275 |
44.0 |
1733530 |
96.5% |
1672856 |
122.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,556,234 |
T→C |
E277G (GAA→GGA) |
yjiN ← |
DUF445 domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,556,234 | 0 | T | C | 95.9%
| 143.9
/ ‑0.4
| 49 | E277G (GAA→GGA) | yjiN | DUF445 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (19/28); total (20/29) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.99e-01 |
CACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATG > NZ_CP009273/4556103‑4556367
|
cacGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATc > 1:144917/1‑139 (MQ=255)
cacGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATc > 2:162393/1‑139 (MQ=255)
cACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa < 1:820272/135‑1 (MQ=255)
ttGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGa > 2:178499/1‑139 (MQ=255)
tGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa < 2:350000/129‑1 (MQ=255)
tGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa > 1:350000/1‑129 (MQ=255)
gATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGAt < 1:362845/138‑1 (MQ=255)
atatCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATc < 2:324702/138‑1 (MQ=255)
tCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGAt > 2:478677/1‑134 (MQ=255)
tCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGAt < 1:478677/134‑1 (MQ=255)
aCTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGa < 2:130152/139‑1 (MQ=255)
tCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGAt > 1:203191/1‑139 (MQ=255)
ccGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATc < 1:784197/138‑1 (MQ=255)
cGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCaa < 1:162393/139‑1 (MQ=255)
cccccACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATgg < 2:780963/139‑1 (MQ=255)
cccccACAATTCACGGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCGTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATgg < 1:307515/139‑1 (MQ=255)
ttCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGgc > 2:653834/1‑114 (MQ=255)
ttCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGgc < 1:653834/114‑1 (MQ=255)
cACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGAt < 1:120655/138‑1 (MQ=255)
aCTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa < 2:491173/86‑1 (MQ=255)
aCTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa > 1:491173/1‑86 (MQ=255)
agaTAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATgcgc < 1:719408/137‑1 (MQ=255)
agaTAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCa < 1:83672/138‑1 (MQ=255)
agaTAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCa < 2:203191/138‑1 (MQ=255)
tAGCGATTTAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGAt < 1:670963/139‑1 (MQ=255)
tAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGAt < 1:467301/139‑1 (MQ=255)
cGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCCCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATcgc > 2:209131/1‑139 (MQ=255)
aTTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGa > 1:504832/1‑139 (MQ=255)
aTTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCA‑TTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGAc > 2:805559/1‑139 (MQ=255)
ttAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGAc < 2:504832/139‑1 (MQ=255)
tAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa > 1:716102/1‑72 (MQ=255)
tAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCa < 2:716102/72‑1 (MQ=255)
aaaaGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACt > 2:433113/1‑138 (MQ=255)
cATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGgcg > 1:259783/1‑89 (MQ=255)
cATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGgcg < 2:259783/89‑1 (MQ=255)
cATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATatcat > 1:200942/1‑138 (MQ=255)
aTCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATatcatc < 1:433113/138‑1 (MQ=255)
cttTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCaa < 1:714965/135‑1 (MQ=255)
cTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATc > 2:474034/1‑57 (MQ=255)
cTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATc < 1:474034/57‑1 (MQ=255)
ttttACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACcgcg > 1:492138/1‑139 (MQ=255)
gCATCGGCTCGCGCTGCCA‑TTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAAc < 1:805559/139‑1 (MQ=255)
cATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAAc > 1:503546/1‑139 (MQ=255)
cTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTc < 1:714764/139‑1 (MQ=255)
cgcTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCcgcg < 1:754697/139‑1 (MQ=255)
gcTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGa < 1:533083/90‑1 (MQ=255)
gcTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGa > 2:533083/1‑90 (MQ=255)
gcTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCgcgc < 1:178499/139‑1 (MQ=255)
ccATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATg > 2:786691/1‑139 (MQ=255)
|
CACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATG > NZ_CP009273/4556103‑4556367
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGATGCGTTCTTTCACACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATGTTCGCCCAACC > NZ_CP009273/4556087‑4556378
|
GCGATGCGTTCTTTCACACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCC < SRR3722120.108949/150‑1 (MQ=60)
GCGATGCGTTCTTTCACACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCC < SRR3722120.607056/150‑1 (MQ=60)
ATGCGTTCTTTCACACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGAT < SRR3722120.470560/151‑1 (MQ=60)
GCGTTCTTTCACACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCG > SRR3722120.146873/1‑151 (MQ=60)
ATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATC > SRR3722120.355058/1‑151 (MQ=60)
TCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATC < SRR3722120.831307/147‑1 (MQ=60)
TGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGG < SRR3722120.368126/150‑1 (MQ=60)
TGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGG < SRR3722120.485590/150‑1 (MQ=60)
tttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGT < SRR3722120.480887/79‑1 (MQ=60)
CTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATC > SRR3722120.206009/1‑151 (MQ=60)
gtgtataagagacagTCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACG < SRR3722120.662830/136‑1 (MQ=60)
CCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGC < SRR3722120.794760/150‑1 (MQ=60)
CCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGG < SRR3722120.164621/151‑1 (MQ=60)
CCCCCCACAATTCACGGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCGTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATG < SRR3722120.311975/151‑1 (MQ=60)
CCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCctgtctcttatacacatctccgagcccacgagactaaggcga > SRR3722120.498228/1‑108 (MQ=60)
TCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCG < SRR3722120.122249/150‑1 (MQ=60)
CTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGAC > SRR3722120.512053/1‑151 (MQ=60)
GAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtc > SRR3722120.725861/1‑94 (MQ=60)
GAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACT < SRR3722120.84748/150‑1 (MQ=60)
GAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGAC < SRR3722120.729197/149‑1 (MQ=60)
ATAGCGATTTAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATA < SRR3722120.680154/151‑1 (MQ=60)
ATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATA < SRR3722120.474077/151‑1 (MQ=60)
ccttagtctcgtgggctcggagatgtgtataagagacaGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATC < SRR3722120.540650/113‑1 (MQ=60)
ATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGGAGGTGGCGCGATCAAACGCctgtctcttatacacatctccgagcccacgagactaaggc > SRR3722120.263535/1‑111 (MQ=60)
ATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATC > SRR3722120.203727/1‑150 (MQ=60)
GCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTTCCGGATCGTTTTTCAGCTTTTCGATCAGGGCGAAGGAGGTCGGATCAAACGTATGGCGGATCTGATGGGCACGATCGCGCCGAATATTATCAAGCAA > SRR3722120.241811/1‑149 (MQ=60)
CATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAAT < SRR3722120.439460/150‑1 (MQ=60)
TCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTC < SRR3722120.724712/147‑1 (MQ=60)
TTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGT > SRR3722120.499224/1‑151 (MQ=60)
GCTTTTTACGGCATCGGCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACC > SRR3722120.510749/1‑151 (MQ=60)
GGCATCGGCTCGCGCTGCCA‑TTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGC < SRR3722120.816422/151‑1 (MQ=60)
GCTCGCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATGTT < SRR3722120.724508/151‑1 (MQ=60)
GCGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATGTTCGCC < SRR3722120.764897/151‑1 (MQ=60)
CGCTGCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATGTTCGCCC < SRR3722120.180931/151‑1 (MQ=60)
GCCATTCCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATGTTCGCCCAACC > SRR3722120.695344/1‑151 (MQ=60)
|
GCGATGCGTTCTTTCACACGAGAATCTTCACTGTTGATATCCACTTTCAGCCATTCCCGTAAATCCCCCCACAATTCACTGAGATAGCGATTAAAAGCTTCATCTTCTTTCAGATAGCTTTTTACGGCATCGGCTCGCGCTGCCATTTCCGGATCGTTTTTCAGCTTGTCGATCAGGGCGAAGGTGGCGCGATCAAACGCATGGCGGATCTGATGCGCACGATCGCGACTAATATCATCAAGCAAAGAATTCACCGCGTCAGAAACCAACTCCGCGCTATGTTCGCCCAACC > NZ_CP009273/4556087‑4556378
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
