Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F5 I102 R1
|
278 |
39.1 |
2251254 |
95.8% |
2156701 |
87.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
485,143 |
A→G |
D1051G (GAT→GGT) |
mscK → |
mechanosensitive channel MscK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 485,143 | 0 | A | G | 100.0%
| 221.0
/ NA
| 59 | D1051G (GAT→GGT) | mscK | mechanosensitive channel MscK |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/34); total (25/34) |
TTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGATCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCTGTGC > NZ_CP009273/485055‑485228
|
ttACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTc > 1:68186/1‑91 (MQ=255)
ttACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTc > 2:703684/1‑91 (MQ=255)
ttACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTc > 2:700266/1‑91 (MQ=255)
tACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCa > 1:983045/1‑91 (MQ=255)
aaGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGc < 1:399574/91‑1 (MQ=255)
aaGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTCGGGTCATGAGc < 2:1124199/91‑1 (MQ=255)
aGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCt > 1:558009/1‑91 (MQ=255)
aGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCt > 1:163621/1‑91 (MQ=255)
gggcgcgACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTg < 1:1084436/87‑1 (MQ=255)
ggcggcGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTg < 2:877903/91‑1 (MQ=255)
ggcggcGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCCGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTg < 1:1051697/91‑1 (MQ=255)
gcggcgACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGc > 1:684671/1‑91 (MQ=255)
cggcgACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCg < 1:327484/91‑1 (MQ=255)
cggcgACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCg < 2:216232/91‑1 (MQ=255)
gcgACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTc < 1:703684/91‑1 (MQ=255)
gcgACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTc > 2:415929/1‑91 (MQ=255)
tGAGCACCCAAGGGTTATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTAt < 2:354366/91‑1 (MQ=255)
tGAGCACCCAAGGGTGATGCGCGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTAt < 2:504986/91‑1 (MQ=255)
tGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTAt < 2:1030385/91‑1 (MQ=255)
tGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTAt < 2:260231/91‑1 (MQ=255)
tGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTAt < 2:140983/91‑1 (MQ=255)
cACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGc < 2:629024/91‑1 (MQ=255)
cAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGa < 1:356339/91‑1 (MQ=255)
cAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGa > 1:315447/1‑91 (MQ=255)
gggTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACt > 1:702048/1‑91 (MQ=255)
gTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGc > 1:879645/1‑91 (MQ=255)
aTGCACGACCCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTg > 2:1111869/1‑91 (MQ=255)
aTGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTg < 1:595612/66‑1 (MQ=255)
aTGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTg > 2:595612/1‑66 (MQ=255)
aTGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTg > 1:780703/1‑91 (MQ=255)
aTGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTg > 2:740529/1‑91 (MQ=255)
cACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGAcc < 2:1052196/91‑1 (MQ=255)
cACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGAcc < 1:1116174/91‑1 (MQ=255)
cGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGt > 2:631285/1‑91 (MQ=255)
cGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGt > 2:315809/1‑91 (MQ=255)
aaCCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAg > 1:629615/1‑91 (MQ=255)
aTGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTa > 1:613114/1‑91 (MQ=255)
gCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACt < 2:999928/91‑1 (MQ=255)
ggAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTc > 1:19434/1‑91 (MQ=255)
aaGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGa < 2:702048/91‑1 (MQ=255)
ttcttTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGc < 2:1104998/91‑1 (MQ=255)
ttcttTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGc < 2:251781/91‑1 (MQ=255)
tttACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGa < 2:1046266/91‑1 (MQ=255)
tttACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGa < 2:405060/91‑1 (MQ=255)
tttACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGa < 2:95353/91‑1 (MQ=255)
tttACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGa < 2:710488/91‑1 (MQ=255)
tACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAAc < 1:1111869/91‑1 (MQ=255)
tACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAAc < 2:80398/91‑1 (MQ=255)
tACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAAc < 2:613114/91‑1 (MQ=255)
tACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAAc < 1:137057/91‑1 (MQ=255)
gCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTa > 1:519804/1‑91 (MQ=255)
aTTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACt < 1:155314/91‑1 (MQ=255)
aTTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACt < 1:25248/91‑1 (MQ=255)
aTTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACt > 1:516504/1‑91 (MQ=255)
gTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGa < 2:684671/91‑1 (MQ=255)
aGCTCGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTGCTATCGATCAGc < 2:77109/91‑1 (MQ=255)
aGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGc > 1:201831/1‑91 (MQ=255)
aGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGc > 1:369259/1‑91 (MQ=255)
gCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCt > 2:804405/1‑91 (MQ=255)
gTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCTGTGc > 2:223061/1‑91 (MQ=255)
|
TTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGATCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCTGTGC > NZ_CP009273/485055‑485228
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGCGTAAAGTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGATCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCTGTGCCGTGAAAACGACATC > NZ_CP009273/485043‑485243
|
GTGCGTAAAGTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGG > SRR3722125.738369/1‑101 (MQ=60)
GCGTAAAGTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTC > SRR3722125.69442/1‑101 (MQ=60)
CGTAAAGTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCA > SRR3722125.1005000/1‑101 (MQ=60)
AAGTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAG > SRR3722125.337836/1‑101 (MQ=60)
GTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCT > SRR3722125.569952/1‑101 (MQ=60)
GTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCT > SRR3722125.166756/1‑101 (MQ=60)
GTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGC > SRR3722125.699444/1‑101 (MQ=60)
AAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTA < SRR3722125.407970/101‑1 (MQ=60)
gtgtataagagacagCCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATG < SRR3722125.608423/86‑1 (MQ=60)
gggcGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATG < SRR3722125.1108856/97‑1 (MQ=60)
cgagatcatgcctagtctcgtgggctcggagatgtgtataagagacagCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATG < SRR3722125.617135/53‑1 (MQ=60)
GGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCCGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATG < SRR3722125.1075319/101‑1 (MQ=60)
CGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTG < SRR3722125.334244/101‑1 (MQ=60)
GCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCG < SRR3722125.718844/101‑1 (MQ=60)
ACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGA > SRR3722125.321929/1‑101 (MQ=60)
GAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACT > SRR3722125.717169/1‑101 (MQ=60)
GCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGC > SRR3722125.899100/1‑101 (MQ=60)
CCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTG > SRR3722125.797706/1‑101 (MQ=60)
CAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGAC < SRR3722125.363799/101‑1 (MQ=60)
GTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAG > SRR3722125.643180/1‑101 (MQ=60)
GCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTA > SRR3722125.626337/1‑101 (MQ=60)
CACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTAC < SRR3722125.1141368/101‑1 (MQ=60)
AACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTC > SRR3722125.19790/1‑101 (MQ=60)
CTTCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTA > SRR3722125.530861/1‑101 (MQ=60)
TCTTTACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACT > SRR3722125.527473/1‑101 (MQ=60)
TACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCG < SRR3722125.139675/101‑1 (MQ=60)
TACGGCATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCG < SRR3722125.1136948/101‑1 (MQ=60)
ATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGC > SRR3722125.376997/1‑101 (MQ=60)
ATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGC < SRR3722125.25690/101‑1 (MQ=60)
ATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGC > SRR3722125.205812/1‑101 (MQ=60)
ATTTGGTGCCAGCACGTTGGGTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGC < SRR3722125.158277/101‑1 (MQ=60)
GTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGCACCGGACTATCGATCAGCTGTGCCGTGAAAACGACATC > SRR3722125.195711/1‑101 (MQ=60)
GTCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCTGTGCCGTGAAAACGACATC > SRR3722125.1098270/1‑101 (MQ=60)
|
GTGCGTAAAGTGTTACTGAAGGCGGCGACTGAGCACCCAAGGGTGATGCACGAACCAATGCCGGAAGTCTTCTTTACGGCATTTGGTGCCAGCACGTTGGATCATGAGCTGCGTCTGTATGTGCGTGAACTGCGTGACCGTAGTCGTACTGTCGATGAGCTGAACCGTACTATCGATCAGCTGTGCCGTGAAAACGACATC > NZ_CP009273/485043‑485243
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
