Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
547,771 |
T→C |
T94A (ACT→GCT) |
purK ← |
5‑(carboxyamino)imidazole ribonucleotide synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 547,771 | 0 | T | C | 100.0%
| 205.5
/ NA
| 56 | T94A (ACT→GCT) | purK | 5‑(carboxyamino)imidazole ribonucleotide synthase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (31/25); total (31/25) |
GACCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGTCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTATCT > NZ_CP009273/547660‑547905
|
gACCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAgct < 2:1047617/138‑1 (MQ=255)
cgcgACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCtt < 1:220218/139‑1 (MQ=255)
cgcgACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCtt < 2:282373/139‑1 (MQ=255)
aTAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAGACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGa < 1:848076/139‑1 (MQ=255)
ccaccaGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGt < 2:870393/139‑1 (MQ=255)
caGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAg < 2:961536/97‑1 (MQ=255)
caGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAg > 1:961536/1‑97 (MQ=255)
caGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAg > 2:117925/1‑138 (MQ=255)
caGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAg > 1:807718/1‑138 (MQ=255)
gTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCaa > 1:40971/1‑139 (MQ=255)
cGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCACTAATCg > 1:454711/1‑139 (MQ=255)
cGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCg > 1:1195461/1‑139 (MQ=255)
aaCAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGaa < 1:1089883/138‑1 (MQ=255)
aaCAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGaa > 2:517401/1‑138 (MQ=255)
aaCAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGaa > 2:4898/1‑138 (MQ=255)
aaCAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGaa > 1:366888/1‑138 (MQ=255)
aaCAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGa < 2:366888/137‑1 (MQ=255)
cGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCtt < 2:290097/102‑1 (MQ=255)
cGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCtt > 1:290097/1‑102 (MQ=255)
ccTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACaa < 2:474483/139‑1 (MQ=255)
tCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGAt > 1:1043278/1‑139 (MQ=255)
gCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAg < 1:569311/68‑1 (MQ=255)
gCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAg > 2:569311/1‑68 (MQ=255)
cAGGCTACTCGCTGCGTTGGGCAAGTTACTGCCACGGGGCAGCCGGCAGGTGGGGCTTATCGAAAAGCTGCTTCTGAGACAGACGGTCAGCGAGAATCGAGAACACATCGCGGTTCACAAAGGCCGGGTGGCGGGCCAg > 2:27875/1‑139 (MQ=255)
cAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACgg > 1:1226954/1‑86 (MQ=255)
cAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACgg < 2:1226954/86‑1 (MQ=255)
cAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAg > 1:883550/1‑139 (MQ=255)
cAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAg > 2:675971/1‑139 (MQ=255)
cAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAg > 2:973600/1‑139 (MQ=255)
gCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTcaca < 2:647083/116‑1 (MQ=255)
gCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTcaca > 1:365906/1‑116 (MQ=255)
gCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTcaca < 2:365906/116‑1 (MQ=255)
gCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTcaca > 1:647083/1‑116 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCaa < 2:1196044/85‑1 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCaa > 1:1196044/1‑85 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGa < 2:673146/120‑1 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGa > 1:673146/1‑120 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGgcgcgc < 2:622371/128‑1 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGgcgcgc > 1:622371/1‑128 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCggg > 2:766788/1‑139 (MQ=255)
tCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCggg > 1:843671/1‑139 (MQ=255)
gCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGCACTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCCCAAAGGCCGGCTGGCGCGCCAGCTCGCGGGATAAt > 2:613045/1‑139 (MQ=255)
gCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTcg > 2:1193024/1‑130 (MQ=255)
gCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTcg < 1:1193024/130‑1 (MQ=255)
cGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATg > 2:965201/1‑139 (MQ=255)
ttCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACgg < 2:33126/70‑1 (MQ=255)
ttCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACgg > 1:33126/1‑70 (MQ=255)
ttCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACg < 2:37782/69‑1 (MQ=255)
ttCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACg > 1:37782/1‑69 (MQ=255)
tAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGc < 1:517401/139‑1 (MQ=255)
ccACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTcg < 2:392170/112‑1 (MQ=255)
ccACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTcg > 1:392170/1‑112 (MQ=255)
ccACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCg < 1:282720/138‑1 (MQ=255)
tGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACgg > 2:834621/1‑49 (MQ=255)
tGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACgg < 1:834621/49‑1 (MQ=255)
cAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTAtct < 2:40971/138‑1 (MQ=255)
|
GACCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGTCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTATCT > NZ_CP009273/547660‑547905
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTAACTGTTCGGTTTCATTTGCGCGTAAACGCCATTGACCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGTCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTATCTCAG > NZ_CP009273/547623‑547908
|
GGTAACTGTCCGGTTTCATTTGCGCGTAAACGCCATTGACCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCG < SRR3722129.138342/151‑1 (MQ=60)
atatatgttgtttgtttgtttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGG < SRR3722129.702464/53‑1 (MQ=60)
agaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAG < SRR3722129.577744/90‑1 (MQ=60)
CCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGAC < SRR3722129.223281/151‑1 (MQ=60)
GTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGctgtctcttatacacatctccgagcccacgagactaaggcg > SRR3722129.746876/1‑109 (MQ=60)
GTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCtgtctcttatacacatctccgagcccacg > SRR3722129.975164/1‑120 (MQ=60)
GTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGC > SRR3722129.819354/1‑150 (MQ=60)
CATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAGACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAAT < SRR3722129.860204/151‑1 (MQ=60)
CATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAAT > SRR3722129.41473/1‑151 (MQ=60)
tgtttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAAT < SRR3722129.846608/71‑1 (MQ=60)
CACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCACTAATCGG > SRR3722129.461277/1‑151 (MQ=60)
CACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGG > SRR3722129.1212093/1‑151 (MQ=60)
GTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAAC > SRR3722129.372267/1‑150 (MQ=60)
CGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACctgtctcttatacacatctccgagccc > SRR3722129.294262/1‑124 (MQ=60)
TAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGT < SRR3722129.1105131/150‑1 (MQ=60)
CACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATG > SRR3722129.1057933/1‑151 (MQ=60)
ATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCtgtctcttatacacatctccgagcccacgagactaaggcga > SRR3722129.1244016/1‑109 (MQ=60)
ATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGC > SRR3722129.896137/1‑151 (MQ=60)
AAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGctgtctcttatac > SRR3722129.371227/1‑138 (MQ=60)
AAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGctgtctcttatac > SRR3722129.656728/1‑138 (MQ=60)
CCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACctgtctcttatacacatctccgagcccacgagactaaggcgaat > SRR3722129.1212688/1‑107 (MQ=60)
CCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTgtctctt > SRR3722129.683092/1‑144 (MQ=60)
CCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGT > SRR3722129.855757/1‑151 (MQ=60)
CCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGC > SRR3722129.631623/1‑151 (MQ=60)
GCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGC < SRR3722129.1209627/151‑1 (MQ=60)
CACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAActgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttc > SRR3722129.38246/1‑91 (MQ=60)
CACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtctt > SRR3722129.33534/1‑93 (MQ=60)
GCAAGTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCctgtctcttatacacat > SRR3722129.397891/1‑134 (MQ=60)
GTAACTGCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTAT < SRR3722129.524961/151‑1 (MQ=60)
GCCACGGTGCAGCCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTATCTCAG < SRR3722129.286778/150‑1 (MQ=60)
|
GGTAACTGTTCGGTTTCATTTGCGCGTAAACGCCATTGACCGCGACCGTCATAACCACCAGTGCGACGCTTAACAATCGCCAGCTCACCTAAACGATCAAACACCGCAGGCCACTCGCTGCGTTCGGCAAGTAACTGCCACGGTGCAGTCGGCAGGTGGAGCTTATCGAAAAGCTGCTTCTGAGTCAGACGGTCAGCAATAATCGGGAACACATCGCGGTTCACAAAGGCCGGATGGCGCGCCAGCTCGCGGGTTAATGCGGTTTCCGGCCAGCGTTCTATCTCAG > NZ_CP009273/547623‑547908
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
