Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
635,912 |
G→A |
G235D (GGC→GAC) |
ahpF → |
alkyl hydroperoxide reductase subunit F |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 635,912 | 0 | G | A | 91.1%
| 167.5
/ 6.7
| 56 | G235D (GGC→GAC) | ahpF | alkyl hydroperoxide reductase subunit F |
| Reads supporting (aligned to +/- strand): ref base G (3/2); new base A (23/28); total (26/30) |
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.53e-01 |
AAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAATA > NZ_CP009273/635777‑636047
|
aaaTCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACAt < 1:888723/139‑1 (MQ=255)
aaaTCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACAt < 2:790792/139‑1 (MQ=255)
aaaTCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACAt < 2:748659/139‑1 (MQ=255)
gTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTa < 2:238971/139‑1 (MQ=255)
ttGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTAc > 2:456384/1‑139 (MQ=255)
gCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTAcc < 2:73677/138‑1 (MQ=255)
aCTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTAATCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCg > 2:342803/1‑139 (MQ=255)
gcgcGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACg > 1:299632/1‑139 (MQ=255)
aaaaCGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTtggt < 2:299632/139‑1 (MQ=255)
cGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTc < 1:879022/139‑1 (MQ=255)
tGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAg < 2:443669/139‑1 (MQ=255)
tGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAg < 1:986221/139‑1 (MQ=255)
ggCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCGGCAGCCATTTAATCCGCACGTAAAGACATCCGTACCGGTGTGATGGGCGAAAGTTTTGGGGGGCAGATc > 2:915895/1‑139 (MQ=255)
ggCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGGGGTCAGATc > 2:915840/1‑139 (MQ=255)
cAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCt < 2:1093621/139‑1 (MQ=255)
gaagaGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCg < 2:155704/139‑1 (MQ=255)
tGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGt > 1:986970/1‑139 (MQ=255)
gTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCg > 2:1135331/1‑138 (MQ=255)
tGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaa < 2:986970/139‑1 (MQ=255)
tGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaa < 1:700328/139‑1 (MQ=255)
aTGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCCGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGGGGTCAGATCCTCGATACCGTTGATATCGaaaa > 1:211439/1‑139 (MQ=255)
aTGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaaaa > 2:294054/1‑139 (MQ=255)
aTGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaaaa > 1:297765/1‑139 (MQ=255)
aTGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCAGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaaa > 2:1198529/1‑138 (MQ=255)
cTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTa < 1:342803/139‑1 (MQ=255)
aTGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACAt > 1:568506/1‑139 (MQ=255)
tGACGTATTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACAtt > 2:1062409/1‑139 (MQ=255)
cGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCt < 2:568506/139‑1 (MQ=255)
aTTAATCGTCGGTTCCGGCCCGGCGGGTGCCGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATTGAAAACTACATTTCTGTa > 1:484079/1‑139 (MQ=255)
aTTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCg > 1:689465/1‑107 (MQ=255)
aTTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCg < 2:689465/107‑1 (MQ=255)
aTTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTa > 1:1230871/1‑139 (MQ=255)
aTTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGGTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTa > 2:918448/1‑139 (MQ=255)
ttAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTAc > 2:342239/1‑139 (MQ=255)
aaTCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTAcc < 1:862130/138‑1 (MQ=255)
aaTCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTAcc < 1:456384/138‑1 (MQ=255)
tcgtcgGTTGCGGCACGGCGGGTGCAGCCGCAGCAAGTGACTCTGCACGTAAAGACATCCGCACCGGTCTGATGGACGAACGTTTTGGTGGTCAGATCCTCGAGACCGTTGATATCGAAAACTTCATTTCTGTACCGaa < 2:1219159/139‑1 (MQ=255)
tcgtcgGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGaa < 2:297765/139‑1 (MQ=255)
cgGTTCCGGTCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACt > 1:882448/1‑139 (MQ=255)
cgGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACt > 1:1070960/1‑139 (MQ=255)
gTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGa < 1:342239/139‑1 (MQ=255)
gTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGa < 1:1135331/139‑1 (MQ=255)
ccggcGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGa < 1:116698/139‑1 (MQ=255)
gcggGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGc > 1:1290965/1‑139 (MQ=255)
cAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAgg < 1:294054/139‑1 (MQ=255)
gCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGgcg < 2:665518/139‑1 (MQ=255)
cGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGgcg > 2:1097537/1‑138 (MQ=255)
gcaATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaaaa > 1:1135639/1‑89 (MQ=255)
gcaATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGaaaa < 2:1135639/89‑1 (MQ=255)
gcaATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTg > 2:31990/1‑138 (MQ=255)
cTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCa < 1:1062409/138‑1 (MQ=255)
cGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACg < 2:484079/137‑1 (MQ=255)
cGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGtt > 2:205593/1‑139 (MQ=255)
gCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGtt > 2:14093/1‑138 (MQ=255)
gCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTtg < 2:291950/139‑1 (MQ=255)
aaGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAATa < 2:105295/139‑1 (MQ=255)
|
AAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAATA > NZ_CP009273/635777‑636047
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATGACGTTGACTGAAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAATACGACGTTG > NZ_CP009273/635763‑636055
|
CATGACGTTGACTGAAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGAC < SRR3722129.838809/151‑1 (MQ=60)
GACTGAAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTAC < SRR3722129.995647/150‑1 (MQ=60)
GAAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTC < SRR3722129.901365/151‑1 (MQ=60)
AATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGT > SRR3722129.303912/1‑151 (MQ=60)
gttgtgatattgaaggtttgcctgttcttcctgtgtctttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGG < SRR3722129.1284476/35‑1 (MQ=60)
ACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGAT < SRR3722129.891553/151‑1 (MQ=60)
GTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATAC < SRR3722129.1000165/151‑1 (MQ=60)
GGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTT > SRR3722129.1000923/1‑151 (MQ=60)
ttttttttttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTG < SRR3722129.962646/64‑1 (MQ=60)
gaaaaagcataaaGCTTATGACGTATTAATCGTCGGTTCCGGCCAGGCGGGGGAAGCGGCACACATTTACTCCGCACGTAAAGACATCCGTACCGGTCCGATGGGCGAACGTTTTGGTGGTCAGActgtctcttatacacatctccgagcc > SRR3722129.322138/14‑125 (MQ=60)
GAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCCGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGGGGTCAGATCCTCGATACCGTTGATATCGAAAAC > SRR3722129.214380/1‑151 (MQ=60)
GAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAAC > SRR3722129.302026/1‑151 (MQ=60)
GCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATT > SRR3722129.576926/1‑151 (MQ=60)
GTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTC < SRR3722129.710654/151‑1 (MQ=60)
GCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCCGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATTGAAAACTACATTTCTGTAC > SRR3722129.491077/1‑151 (MQ=60)
GCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATctgtctcttatacacatctccg > SRR3722129.699638/1‑129 (MQ=60)
GCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTAC < SRR3722129.347749/151‑1 (MQ=60)
GCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGGGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTAC > SRR3722129.1247975/1‑151 (MQ=60)
agagacagATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGAC < SRR3722129.631268/143‑1 (MQ=60)
GTATTAATCGTCGGTTCCGGTCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTG > SRR3722129.895022/1‑151 (MQ=60)
GTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTG > SRR3722129.1085970/1‑151 (MQ=60)
TAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAG < SRR3722129.462974/150‑1 (MQ=60)
TAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAG < SRR3722129.874411/150‑1 (MQ=60)
GGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGC < SRR3722129.347172/151‑1 (MQ=60)
GGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGC < SRR3722129.1151137/151‑1 (MQ=60)
GTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCT > SRR3722129.1308845/1‑151 (MQ=60)
CCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGC < SRR3722129.118300/151‑1 (MQ=60)
GTGCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGctgtctcttatacacatctccgagcccacgagactaaggc > SRR3722129.1151450/1‑111 (MQ=60)
GCAGCGGCAGCAATTTACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAG < SRR3722129.298273/151‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacaGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAG < SRR3722129.455544/120‑1 (MQ=60)
ACTCCGCACGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAAT < SRR3722129.1077328/150‑1 (MQ=60)
CGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgc > SRR3722129.497630/1‑89 (MQ=60)
CGTAAAGACATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAATACGACGTTG > SRR3722129.879086/1‑151 (MQ=60)
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CATGACGTTGACTGAAATCGTTGCCAAAATTGATACTGGCGCGGAAAAACGTGCGGCAGAAGAGCTGAACAAGCGTGATGCTTATGACGTATTAATCGTCGGTTCCGGCCCGGCGGGTGCAGCGGCAGCAATTTACTCCGCACGTAAAGGCATCCGTACCGGTCTGATGGGCGAACGTTTTGGTGGTCAGATCCTCGATACCGTTGATATCGAAAACTACATTTCTGTACCGAAGACTGAAGGGCAGAAGCTGGCAGGCGCACTGAAAGTTCACGTTGATGAATACGACGTTG > NZ_CP009273/635763‑636055
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
