Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,017,704 |
C→A |
A549S (GCC→TCC) |
yccS ← |
YccS family putative transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,017,704 | 0 | C | A | 100.0%
| 202.3
/ NA
| 52 | A549S (GCC→TCC) | yccS | YccS family putative transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (28/24); total (28/24) |
CCGACGCCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGCGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAG > NZ_CP009273/1017578‑1017836
|
ccGACGCCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCAt > 2:79624/1‑139 (MQ=255)
tCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGa > 1:848271/1‑138 (MQ=255)
gtgtgCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAg > 1:1035920/1‑139 (MQ=255)
tgtgCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGt < 2:1035920/139‑1 (MQ=255)
tgtgCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGt < 2:933970/139‑1 (MQ=255)
aTCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGc > 2:1074609/1‑139 (MQ=255)
aTCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGc < 2:819420/139‑1 (MQ=255)
tCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCGGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGcc < 1:398277/139‑1 (MQ=255)
cgcgGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGt > 2:945908/1‑132 (MQ=255)
cgcgGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGt < 1:945908/132‑1 (MQ=255)
cgcgGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGc > 2:911078/1‑137 (MQ=255)
cggcggGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGc > 2:444650/1‑135 (MQ=255)
ggcggGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGcc < 1:319310/135‑1 (MQ=255)
ggcggGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGcc > 2:319310/1‑135 (MQ=255)
atacgCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTgcc < 2:315192/139‑1 (MQ=255)
tacgCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTgccg > 1:1016407/1‑139 (MQ=255)
tacgCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGGGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTgccg > 1:308572/1‑139 (MQ=255)
aCGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAg < 2:723698/106‑1 (MQ=255)
aCGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAg > 1:723698/1‑106 (MQ=255)
aCGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCa < 1:911078/139‑1 (MQ=255)
ggTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAAt > 1:1043262/1‑139 (MQ=255)
ccTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTgccgcc > 2:542151/1‑119 (MQ=255)
ccTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTgccgcc < 1:542151/119‑1 (MQ=255)
aTGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGc > 2:962636/1‑139 (MQ=255)
tATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTAt < 1:962636/139‑1 (MQ=255)
aTTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAg > 1:367799/1‑92 (MQ=255)
aTTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAg < 2:367799/92‑1 (MQ=255)
gTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCa > 1:1245381/1‑103 (MQ=255)
gTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCa < 2:1245381/103‑1 (MQ=255)
gTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATgg < 2:689701/111‑1 (MQ=255)
gTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATgg > 1:689701/1‑111 (MQ=255)
gCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGt < 1:635290/138‑1 (MQ=255)
cATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGt < 1:1026840/69‑1 (MQ=255)
cATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGt > 2:1026840/1‑69 (MQ=255)
cATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATg < 1:576635/80‑1 (MQ=255)
cATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATg > 2:576635/1‑80 (MQ=255)
cATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTaa > 1:691037/1‑139 (MQ=255)
cGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGc > 2:791955/1‑139 (MQ=255)
gagaTACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCt < 2:691037/139‑1 (MQ=255)
agaTACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTc < 2:35636/65‑1 (MQ=255)
agaTACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTc > 1:35636/1‑65 (MQ=255)
cGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCaa < 1:735995/139‑1 (MQ=255)
ttGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCtt > 1:138663/1‑139 (MQ=255)
ttGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCtt > 1:1264465/1‑139 (MQ=255)
ggCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATg < 1:713150/61‑1 (MQ=255)
ggCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATg > 2:713150/1‑61 (MQ=255)
gCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCAc > 1:522339/1‑139 (MQ=255)
tgtgGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTAcg > 2:577221/1‑106 (MQ=255)
tgtgGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTAcg > 1:133387/1‑106 (MQ=255)
tgtgGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTAcg < 1:577221/106‑1 (MQ=255)
tgtgGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTAcg < 2:133387/106‑1 (MQ=255)
tgGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAg < 1:689130/136‑1 (MQ=255)
|
CCGACGCCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGCGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAG > NZ_CP009273/1017578‑1017836
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTGGACATATTTGATACCACCGACGCCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGCGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAACAC > NZ_CP009273/1017557‑1017849
|
CGCTGGACATATTTGATACCACCGACGCCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGC < SRR3722129.108425/150‑1 (MQ=60)
CCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAA > SRR3722129.860401/1‑150 (MQ=60)
GCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGT > SRR3722129.1050496/1‑151 (MQ=60)
gaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacaGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATG < SRR3722129.1041306/92‑1 (MQ=60)
GTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATG < SRR3722129.959283/151‑1 (MQ=60)
ATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCGGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTC < SRR3722129.404071/151‑1 (MQ=60)
ATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTC < SRR3722129.323868/151‑1 (MQ=60)
acgatattcgccttagtctcgtgggctcggagatgtgtataagagacaGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGC < SRR3722129.585158/103‑1 (MQ=60)
tcaagcagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagTACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGC < SRR3722129.723628/83‑1 (MQ=60)
GGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGC > SRR3722129.1030757/1‑151 (MQ=60)
GGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGGGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGC > SRR3722129.312981/1‑151 (MQ=60)
CGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATctgtctcttatacacatctccg > SRR3722129.734304/1‑128 (MQ=60)
ATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATG > SRR3722129.1057916/1‑151 (MQ=60)
aagagacaGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGC < SRR3722129.550095/142‑1 (MQ=60)
GACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACC < SRR3722129.923985/151‑1 (MQ=60)
CCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACctgtctcttatacacatctccgagcccacgagacta > SRR3722129.373182/1‑114 (MQ=60)
GTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACctgtctcttatacacatctccgagcc > SRR3722129.1262734/1‑125 (MQ=60)
GTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCctgtctcttatacacatc > SRR3722129.699879/1‑133 (MQ=60)
GTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGA < SRR3722129.976275/151‑1 (MQ=60)
CTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAAC > SRR3722129.701238/1‑151 (MQ=60)
acggagatgtgtataagagacagCAGTTGGCCTCTGTGGAGCGTACGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGC < SRR3722129.585751/128‑1 (MQ=60)
GTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgct > SRR3722129.36077/1‑87 (MQ=60)
GGCATCGAGATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTC < SRR3722129.644734/150‑1 (MQ=60)
GATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTC > SRR3722129.140542/1‑151 (MQ=60)
GATACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTC > SRR3722129.1282043/1‑151 (MQ=60)
ACCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACC > SRR3722129.529969/1‑151 (MQ=60)
CCGACAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCC < SRR3722129.746776/151‑1 (MQ=60)
CAGTTGGCCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCctgtctcttatacacatctccg > SRR3722129.135184/1‑128 (MQ=60)
CCTCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAA > SRR3722129.650432/1‑150 (MQ=60)
TCTGTGGCGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAAC > SRR3722129.281553/1‑151 (MQ=60)
TCTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAAC > SRR3722129.308220/1‑151 (MQ=60)
CTGTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAAC > SRR3722129.723434/1‑150 (MQ=60)
GTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAACAC < SRR3722129.723307/150‑1 (MQ=60)
GTGGAGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAAC < SRR3722129.699296/148‑1 (MQ=60)
|
CGCTGGACATATTTGATACCACCGACGCCAGCTCAGCATCACGGTTGTGTGCATCGCGGCGGGCAATACGATACGCCAGACGGTTATCACGCCCCTGATGGTATTGCTCCAGTATGGCATCGAGATACCGACAGTTGGCCTCTGTGGCGCGTTCGAGCATGCGCGGCAGATTGCGAAACTGCCAGTCAGGCCAGATGTAGCTCACTGCCGCCCACGCAATGGCACAACCAATCAGCGTATCGATTACGCGAGGTAACGCTACTTCAAAACCTTCACCCAGTAAGTTAAAACAC > NZ_CP009273/1017557‑1017849
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
