Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 336 367.5 14491858 96.8% 14028118 150.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC CP009974 3,898,294 (TGGCCGTCGGGTTGCCGAGGACGGTGCAGACCGACTCAA)1→2 coding (197/246 nt) RPPX_17380 → hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 3898232 =114 (0.310)253 (0.830) 138/252 2.0 78.2% coding (135/246 nt) RPPX_17380 hypothetical protein
?CP009974 = 3898270 45 (0.150)coding (173/246 nt) RPPX_17380 hypothetical protein

Only 100 of 386 total aligned reads displayed.

ATGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009974/3898405‑3898232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtcggtctgcaccgtcctcgGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  CP009974/3898270‑3898121
                                                                                                                                                                                                                                                                                                                                    
ATGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCAT                                                                                                                                                                               >  1:3320998/1‑151
 TGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATT                                                                                                                                                                              >  2:4576593/1‑151
 TGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATT                                                                                                                                                                              <  2:5533503/151‑1
  GGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTG                                                                                                                                                                             >  1:1939984/1‑151
  GGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGGCGTTGAGTCGGTCTGCACCGTCCTCGGCCAACCGACGGCCATTG                                                                                                                                                                             >  2:4091131/1‑151
    ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                                                           <  1:924383/151‑1
       ATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCG                                                                                                                                                                        >  1:1148219/1‑151
          TGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTC                                                                                                                                                                     <  1:4991956/151‑1
          TGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTC                                                                                                                                                                         <  1:4533154/147‑1
           GATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCT                                                                                                                                                                    <  1:5803946/151‑1
            ATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTG                                                                                                                                                                   >  1:2060147/1‑151
             TCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGC                                                                                                                                                                  >  1:4373834/1‑151
              CTGCCAAAAAGCCCGGTTTATCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGGCGTTGAGTCGGTCTGCACAGTCCTCGGCAGACCGACGGCCCATGAGTCGGTATGCc                                                                                                                                                                 >  2:6591375/1‑150
               TGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCAC                                                                                                                                                                >  1:6114384/1‑151
                GCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACC                                                                                                                                                               >  2:2029529/1‑151
                  CAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGT                                                                                                                                                             <  1:2005405/151‑1
                  CAAAAAGCCCGGTTTTGCCGGGCGTTTGGGGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGGCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGT                                                                                                                                                             <  2:3656957/151‑1
                    AAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                                                           <  2:1304162/151‑1
                    AAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                                                           >  1:6039689/1‑151
                    AAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                                                           >  1:5200922/1‑151
                    AAAAGCCCGGTTTTTCCCGGCTTTTGGCGCATCCCAGGCACATCAAGCATTGATGACTCGGTCCGACCCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                                                           <  2:4740954/151‑1
                      AAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGGCGGTCTGCACCGTCCTC                                                                                                                                                         >  1:860586/1‑151
                       AGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG                                                                                                                                                        >  1:2492437/1‑151
                         CCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGC                                                                                                                                                      >  1:559527/1‑151
                               TTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCG                                                                                                                                                >  1:1386137/1‑151
                               TTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCG                                                                                                                                                <  1:4319496/151‑1
                                 TTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGAC                                                                                                                                              <  2:6235113/151‑1
                                 TTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGAC                                                                                                                                              <  1:4492767/151‑1
                                  TCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACG                                                                                                                                             <  1:5734300/151‑1
                                    CGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCCGCAACCCGACGGCCATTGAGACGCTCTGCCCCGTCCTCGGCAACCAGACGGC                                                                                                                                           >  2:4228183/1‑151
                                       GCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCAT                                                                                                                                        <  1:6206204/151‑1
                                        CTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATT                                                                                                                                       <  1:2949430/151‑1
                                           TTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                    >  2:3412519/1‑151
                                             GGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCCGCAACCCGACGGCCATTGAGTC                                                                                                                                  >  2:2834127/1‑151
                                              GCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCG                                                                                                                                 >  1:6356185/1‑151
                                                   GCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTG                                                                                                                            <  1:5371705/151‑1
                                                   GCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTG                                                                                                                            >  2:3526807/1‑151
                                                      cggcCACATCAAGCATTGATGCCTCCGTCCGACCCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCAC                                                                                                                         <  2:6510491/147‑1
                                                          CACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTC                                                                                                                     >  1:2408648/1‑151
                                                          CACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTC                                                                                                                     >  1:4671804/1‑151
                                                             ATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTC                                                                                                                  <  2:6021445/151‑1
                                                             ATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCCACGGCCATTCAGTCGGTCTGCACCGTCCTC                                                                                                                  >  2:4517113/1‑151
                                                                AAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGCCGGCCATTGAGTCGGTCTGCACCGTCCTCGAC                                                                                                               >  2:2333353/1‑151
                                                                AAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGAC                                                                                                               >  2:3318789/1‑151
                                                                   CATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCcg                                                                                                            >  2:1504620/1‑149
                                                                    ATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGG                                                                                                           >  1:3631786/1‑151
                                                                    ATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGCCGGTCTGCACCGTACTCGGCAACCCGCCCGCCATCGAGTCGGCCCGCACCCTCCTCGCCCAGG                                                                                                           >  2:6944006/1‑151
                                                                     TTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGA                                                                                                          <  1:728804/151‑1
                                                                        ATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGCCCAGGATTG                                                                                                       >  2:764474/1‑151
                                                                        ATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTG                                                                                                       >  1:128335/1‑151
                                                                        ATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTG                                                                                                       <  1:2687456/151‑1
                                                                         tgcCTCGGTCCGACCCGTCCTCGGCTCCACACCGGTCGTTGACTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGG                                                                                                      <  1:5838662/148‑1
                                                                          GACTCGGTCCGACCCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGT                                                                                                     <  2:3466060/151‑1
                                                                                GTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACAC                                                                                               <  1:2893738/151‑1
                                                                                   CGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGG                                                                                            <  2:4395497/151‑1
                                                                                     AACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTA                                                                                          <  2:1435828/151‑1
                                                                                      ACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCCGTCTGCACCGCCCTCGACCAGGATTGGTGCACACAGGCAT                                                                                         >  2:5699352/1‑151
                                                                                        CGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTT                                                                                       <  1:1761473/151‑1
                                                                                         GTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTG                                                                                      <  2:1039584/151‑1
                                                                                         GTCCTCGGCTACACGCCGGTCGTGGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCGCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTG                                                                                      <  2:3774439/151‑1
                                                                                          TCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGC                                                                                     <  2:3900691/151‑1
                                                                                          TCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGC                                                                                     <  1:5334479/151‑1
                                                                                               GGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGC                                                                                <  2:1130961/151‑1
                                                                                                GCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCT                                                                               >  1:5641290/1‑151
                                                                                                 CTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTT                                                                              <  2:2523680/151‑1
                                                                                                  TACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGCTTCGTGCACACCGGTATTTGCAAGccctt                                                                             >  2:2176048/1‑146
                                                                                                  TACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTA                                                                             <  2:6697008/151‑1
                                                                                                  TACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTA                                                                             <  1:6880653/151‑1
                                                                                                   ACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTAT                                                                            >  1:479401/1‑151
                                                                                                   ACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCACGCTTCGTGCACACAGGTCTTCGCAAGGCTTAT                                                                            >  2:6155869/1‑151
                                                                                                    CACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATG                                                                           >  2:5631284/1‑151
                                                                                                    CACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCACGATTGGTGCACACAGGTATTTGCAAGGCCTATG                                                                           >  2:5793748/1‑151
                                                                                                          GGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCA                                                                     >  2:3138502/1‑151
                                                                                                          GGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCA                                                                     <  1:1121612/151‑1
                                                                                                          GGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCA                                                                     >  2:2713302/1‑151
                                                                                                          GGTCGTGGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCA                                                                     <  2:7071132/151‑1
                                                                                                                   GTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTG                                                            >  1:4142219/1‑151
                                                                                                                        TCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCT                                                       <  2:6813282/151‑1
                                                                                                                        TCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCT                                                       <  2:1708410/151‑1
                                                                                                                          TGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCGCCTTG                                                     <  2:902712/151‑1
                                                                                                                                GTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGA                                               >  1:6694696/1‑151
                                                                                                                                 TCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAA                                              <  1:6402096/151‑1
                                                                                                                                       GCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCA                                        >  1:77324/1‑151
                                                                                                                                         AACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATC                                      <  2:6397905/151‑1
                                                                                                                                          ACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCG                                     <  1:2545617/151‑1
                                                                                                                                             CGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTGCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAAC                                  >  1:6533128/1‑151
                                                                                                                                               ACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTT                                <  1:4421980/151‑1
                                                                                                                                                CGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTG                               >  2:5353337/1‑151
                                                                                                                                                CGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTCGAAGCGCCATCGAACTTG                               >  2:5226402/1‑151
                                                                                                                                                 GGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGC                              >  2:2118011/1‑151
                                                                                                                                                 GGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGC                              <  1:3071192/151‑1
                                                                                                                                                         AGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGACTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAA                      >  1:4918681/1‑151
                                                                                                                                                          GTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAAC                     >  2:4930603/1‑151
                                                                                                                                                          GTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAAC                     >  1:7019444/1‑151
                                                                                                                                                                  GCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGG             <  1:6835770/151‑1
                                                                                                                                                                  GCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGG             <  2:2657558/151‑1
                                                                                                                                                                   CACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGC            <  1:1826334/151‑1
                                                                                                                                                                     CCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACTGTCCTCGACCAGGATTGGTGCATACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGTTGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGA          >  1:230825/1‑151
                                                                                                                                                                          CTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCA     <  1:4838217/151‑1
                                                                                                                                                                          CTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCA     <  1:3817926/151‑1
                                                                                                                                                                                                                                                                                                                                    
ATGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009974/3898405‑3898232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtcggtctgcaccgtcctcgGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  CP009974/3898270‑3898121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A