Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I1 R1 368 332.2 13092066 97.0% 12699304 150.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC CP009974 3,898,294 (TGGCCGTCGGGTTGCCGAGGACGGTGCAGACCGACTCAA)1→2 coding (197/246 nt) RPPX_17380 → hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 3898232 =107 (0.330)247 (0.890) 146/252 0.7 80.1% coding (135/246 nt) RPPX_17380 hypothetical protein
?CP009974 = 3898270 33 (0.120)coding (173/246 nt) RPPX_17380 hypothetical protein

Only 100 of 338 total aligned reads displayed.

ATGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009974/3898405‑3898232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtcggtctgcaccgtcctcgGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  CP009974/3898270‑3898121
                                                                                                                                                                                                                                                                                                                                    
    ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                                                           <  1:1209115/151‑1
    ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                                                           <  2:3003620/151‑1
    ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                                                           <  1:675710/151‑1
    ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                                                           <  1:3861294/151‑1
      CATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTC                                                                                                                                                                         >  2:6022180/1‑151
      CATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTC                                                                                                                                                                         <  2:1877368/151‑1
       ATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCG                                                                                                                                                                        >  2:4864950/1‑151
       ATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCG                                                                                                                                                                        >  1:4766621/1‑151
              CTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCA                                                                                                                                                                 <  1:178706/151‑1
                  CAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGT                                                                                                                                                             >  1:783713/1‑151
                   AAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTC                                                                                                                                                            <  1:6183541/151‑1
                          CCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCA                                                                                                                                                     >  1:5927421/1‑151
                             GTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACC                                                                                                                                                  <  1:3216126/151‑1
                              TTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCC                                                                                                                                                 >  1:1856342/1‑151
                              TTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCC                                                                                                                                                 <  1:5978694/151‑1
                               TTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCG                                                                                                                                                <  1:1984754/151‑1
                                TTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGA                                                                                                                                               >  1:637992/1‑151
                                  TCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACG                                                                                                                                             <  2:2179588/151‑1
                                     GGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATTACTCGGTCCGAACCGTCCTCGGCTACACGCCGGGCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCC                                                                                                                                          >  1:1091116/1‑151
                                     GGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCC                                                                                                                                          >  2:362396/1‑151
                                     GGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCC                                                                                                                                          >  2:1229053/1‑151
                                      GGCTTTTGGCGCAGCCCAGGCACATCAAGGATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCGGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCA                                                                                                                                         <  1:4027817/151‑1
                                       GCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCAGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCAT                                                                                                                                        <  2:5015692/151‑1
                                        CTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATT                                                                                                                                       >  2:4650412/1‑151
                                        CTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATT                                                                                                                                       <  1:5198647/151‑1
                                         TTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCGACCCGACGGCCATTG                                                                                                                                      >  2:6476533/1‑151
                                         TTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTG                                                                                                                                      <  2:4598895/151‑1
                                          TTTGGCGCAGCCCAGGCACATCAAGCGTTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGA                                                                                                                                     <  2:5501333/151‑1
                                           TTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                    <  2:5821618/151‑1
                                           TTGGCGCAGACCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAG                                                                                                                                    >  2:1158973/1‑151
                                            TGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTCAGT                                                                                                                                   >  1:4834247/1‑151
                                            TGGCGCAGCCCAGGCACATCAAGCATTGATGACGCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGT                                                                                                                                   <  1:5101828/151‑1
                                                GCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGT                                                                                                                               >  1:297335/1‑151
                                                 CAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTC                                                                                                                              <  1:1397167/151‑1
                                                  AGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCT                                                                                                                             <  1:2555880/151‑1
                                                  AGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATCGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCT                                                                                                                             >  2:4448063/1‑151
                                                   GCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTc                                                                                                                            >  1:6038203/1‑150
                                                          CACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTC                                                                                                                     <  1:5743024/151‑1
                                                           ACATCAAGAATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                    <  1:1575275/151‑1
                                                            CATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCT                                                                                                                   >  1:3358980/1‑151
                                                              TCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG                                                                                                                 >  1:4544680/1‑151
                                                              TCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGCCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG                                                                                                                 <  1:4913372/151‑1
                                                               CAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGA                                                                                                                <  1:6007829/151‑1
                                                                AAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGAC                                                                                                               >  1:2382909/1‑151
                                                                 AGCATTGATGACTCGTTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACC                                                                                                              <  1:447745/151‑1
                                                                    ATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGG                                                                                                           >  2:2777658/1‑151
                                                                     TTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGA                                                                                                          >  1:908205/1‑151
                                                                     TTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGA                                                                                                          <  2:25657/151‑1
                                                                       GATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGCCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATT                                                                                                        >  1:6141607/1‑151
                                                                        tTGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTG                                                                                                       <  2:4926194/150‑1
                                                                        ATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTG                                                                                                       >  2:401350/1‑151
                                                                         TGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGG                                                                                                      <  1:6159991/151‑1
                                                                            CTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGC                                                                                                   <  1:4133662/151‑1
                                                                            CTCGGTCCGAACCGTCCTCGGCCAGACGCGGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGC                                                                                                   <  2:5324944/151‑1
                                                                               GGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACA                                                                                                >  1:4446801/1‑151
                                                                                  CCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAG                                                                                             >  2:2075394/1‑151
                                                                                  CCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGGCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATGGGTGCACACAG                                                                                             >  1:4808511/1‑151
                                                                                   CGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGG                                                                                            >  1:4331419/1‑151
                                                                                   CGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGG                                                                                            <  2:1860152/151‑1
                                                                                    GAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAtgg                                                                                           >  2:795321/1‑148
                                                                                    GAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGT                                                                                           >  1:3153563/1‑151
                                                                                     AACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCCCACAGCTA                                                                                          >  1:3687683/1‑151
                                                                                      ACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTAT                                                                                         <  1:2456931/151‑1
                                                                                         GTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTG                                                                                      <  2:2382909/151‑1
                                                                                         GTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCCCGACCAGGATTGGTGCACACAGGTATTTt                                                                                      >  2:5639651/1‑150
                                                                                          TCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGC                                                                                     <  1:213445/151‑1
                                                                                            CTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGTCGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAc                                                                                   >  1:3050400/1‑150
                                                                                              CGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGGATTTGCAAGG                                                                                 >  2:3197458/1‑151
                                                                                               GGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGC                                                                                >  1:5284399/1‑151
                                                                                                   ACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTAT                                                                            <  2:2303153/151‑1
                                                                                                     ACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCCACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGACTGGTGCACACAGGTATTTGCAAGGCTTATGG                                                                          >  2:2680294/1‑151
                                                                                                       GCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGT                                                                        <  2:6240236/151‑1
                                                                                                            gCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGT                                                                   <  2:2823243/150‑1
                                                                                                            TCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGT                                                                   >  1:2274736/1‑151
                                                                                                            TCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGT                                                                   <  1:3466977/151‑1
                                                                                                                TGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCC                                                               <  1:4864950/151‑1
                                                                                                                   GTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTG                                                            <  1:819932/151‑1
                                                                                                                     CGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCT                                                          >  2:1804764/1‑151
                                                                                                                        TCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCT                                                       <  2:345911/151‑1
                                                                                                                         CTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACTGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTT                                                      <  2:6003608/151‑1
                                                                                                                          TGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTG                                                     >  2:4758385/1‑151
                                                                                                                          TGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTG                                                     <  2:637992/151‑1
                                                                                                                             ACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCT                                                  <  2:586677/151‑1
                                                                                                                                   CTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGC                                            <  1:1496468/151‑1
                                                                                                                                              GACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACT                                 >  2:3086420/1‑151
                                                                                                                                                     ATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTC                          <  1:499661/151‑1
                                                                                                                                                     ATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTC                          <  2:137410/151‑1
                                                                                                                                                      TTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCA                         >  2:6127318/1‑151
                                                                                                                                                       tggGTCGGTCGGCACCGTCCTCGGCACCCCGACGGCCAGTGAGTCGGTCTGCGCCGTCCGCGACCAGGATTGGTGCACACAGGTAGTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAG                        <  2:4140085/148‑1
                                                                                                                                                        GAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGA                       >  1:2219160/1‑151
                                                                                                                                                          GTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAAC                     <  2:4490360/151‑1
                                                                                                                                                            CGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAG                   <  1:2891716/151‑1
                                                                                                                                                            CGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAG                   <  2:5411032/151‑1
                                                                                                                                                            CGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAG                   >  2:4095650/1‑151
                                                                                                                                                                   CACCGTCCTCGGCAACCCGACGGCCATTGCGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGCATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCCTCGCACTTGCGCTCAGAACAGTTAAGGC            >  2:129798/1‑151
                                                                                                                                                                   CACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGC            >  2:3403551/1‑151
                                                                                                                                                                     CCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGA          >  2:1497903/1‑151
                                                                                                                                                                      CGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGAC         <  2:3853031/151‑1
                                                                                                                                                                           TCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAA    >  1:2776345/1‑151
                                                                                                                                                                             GGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  1:2807757/151‑1
                                                                                                                                                                                                                                                                                                                                    
ATGGATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009974/3898405‑3898232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtcggtctgcaccgtcctcgGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  CP009974/3898270‑3898121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A