Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I1 R1 404 265.1 10478538 96.8% 10143224 150.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC CP009974 3,898,294 (TGGCCGTCGGGTTGCCGAGGACGGTGCAGACCGACTCAA)1→2 coding (197/246 nt) RPPX_17380 → hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 3898232 =86 (0.330)205 (0.930) 133/252 0.3 80.8% coding (135/246 nt) RPPX_17380 hypothetical protein
?CP009974 = 3898270 25 (0.110)coding (173/246 nt) RPPX_17380 hypothetical protein

Only 100 of 270 total aligned reads displayed.

ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009974/3898401‑3898232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtcggtctgcaccgtcctcgGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  CP009974/3898270‑3898121
                                                                                                                                                                                                                                                                                                                                
 TCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGT                                                                                                                                                                          >  1:1780294/1‑151
  CATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTC                                                                                                                                                                         >  1:631231/1‑151
    TTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGG                                                                                                                                                                       <  1:4842585/151‑1
      TGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTC                                                                                                                                                                     >  1:4395487/1‑151
       GATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCT                                                                                                                                                                    <  2:320660/151‑1
           TGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCAC                                                                                                                                                                >  1:1184630/1‑151
           TGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCAC                                                                                                                                                                >  2:3934010/1‑151
             CCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTTAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGCTCTGCACCG                                                                                                                                                              >  2:3853345/1‑151
              CAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGT                                                                                                                                                             >  1:1685204/1‑151
                AAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                                                           <  1:2537362/151‑1
                 AAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGCCCT                                                                                                                                                          >  1:3306129/1‑151
                  AAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTC                                                                                                                                                         <  2:3285481/151‑1
                   AGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG                                                                                                                                                        <  1:4713360/151‑1
                     CCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGC                                                                                                                                                      >  1:4673762/1‑151
                      CCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCA                                                                                                                                                     >  1:1388161/1‑151
                       CGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAA                                                                                                                                                    <  1:2709105/151‑1
                        GGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAAC                                                                                                                                                   >  1:2416054/1‑151
                        GGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAAC                                                                                                                                                   >  2:2770834/1‑151
                        GGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAAC                                                                                                                                                   <  2:1931523/151‑1
                           TTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGTCAACCCc                                                                                                                                                >  1:1558219/1‑150
                           TTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCG                                                                                                                                                <  1:4800938/151‑1
                            TTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTCGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGA                                                                                                                                               >  1:949479/1‑151
                             TTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGAC                                                                                                                                              >  2:4802218/1‑151
                             TTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGAC                                                                                                                                              <  2:207174/151‑1
                              TCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACG                                                                                                                                             >  2:5228847/1‑151
                                  GGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCTCCCACCCGACGGCCg                                                                                                                                         >  2:2901810/1‑150
                                      TTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGA                                                                                                                                     <  2:2991321/151‑1
                                      TTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGA                                                                                                                                     <  1:511627/151‑1
                                         GGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCACTGAGTCGGTCTGCACCGTCCTCGGCCACCCTACGGCCATTCAGgc                                                                                                                                  >  2:4890700/1‑149
                                          GCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGGACCGTCCTCGGCTACGCGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCG                                                                                                                                 <  1:5189125/151‑1
                                           CGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGG                                                                                                                                >  2:1474209/1‑151
                                            GCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGT                                                                                                                               <  2:4963834/151‑1
                                              AGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCT                                                                                                                             >  2:1377721/1‑151
                                              AGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCT                                                                                                                             <  1:2584725/151‑1
                                               GCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCTGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTG                                                                                                                            <  1:3934010/151‑1
                                                  CAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCAC                                                                                                                         >  2:2567951/1‑151
                                                  CAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTCAGTCGGTCTGCAC                                                                                                                         >  2:3809375/1‑151
                                                   AGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACC                                                                                                                        <  2:905042/151‑1
                                                   AGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACC                                                                                                                        <  1:3077115/151‑1
                                                     GCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGT                                                                                                                      >  1:1840445/1‑151
                                                      CACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTC                                                                                                                     <  1:4287273/151‑1
                                                       ACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                    <  1:224292/151‑1
                                                       ACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                    <  1:666506/151‑1
                                                       ACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCC                                                                                                                    >  1:566356/1‑151
                                                             AGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACC                                                                                                              >  2:4726985/1‑151
                                                             AGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACC                                                                                                              <  1:985089/151‑1
                                                               gATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAG                                                                                                            <  1:3973408/150‑1
                                                               CATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAG                                                                                                            <  1:3471527/151‑1
                                                                 TTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGA                                                                                                          >  1:1748959/1‑151
                                                                 TTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGA                                                                                                          <  1:5013603/151‑1
                                                                    ATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTG                                                                                                       >  1:321162/1‑151
                                                                      GACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGT                                                                                                     <  1:4980957/151‑1
                                                                         TCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCCACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTCGTGCA                                                                                                  >  2:3333510/1‑151
                                                                           GGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACA                                                                                                >  2:4199498/1‑151
                                                                            GTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACAC                                                                                               >  1:353467/1‑151
                                                                            GTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACAC                                                                                               >  1:2890666/1‑151
                                                                            GTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCCGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCCACCAGGATTGGTGCACAC                                                                                               >  2:79587/1‑151
                                                                               CGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGG                                                                                            <  1:822958/151‑1
                                                                                GAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCCGGATTGGTGCACACAGGT                                                                                           >  2:5079216/1‑151
                                                                                   CCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATT                                                                                        <  2:226117/151‑1
                                                                                       CCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGCCGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCA                                                                                    <  2:3281039/151‑1
                                                                                       CCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCA                                                                                    >  1:3661367/1‑151
                                                                                       CCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGCCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGCTGCACGCAGGCATTTTCA                                                                                    >  2:3489683/1‑151
                                                                                           GGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGC                                                                                >  1:755328/1‑151
                                                                                            GCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCT                                                                               >  1:3584818/1‑151
                                                                                             CTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTT                                                                              >  1:1858472/1‑151
                                                                                              TACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTA                                                                             <  2:1120414/151‑1
                                                                                               ACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTAT                                                                            <  2:4017642/151‑1
                                                                                               ACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTAT                                                                            <  1:3757298/151‑1
                                                                                                 ACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGG                                                                          >  2:4837968/1‑151
                                                                                                  CGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGG                                                                         <  1:3839851/151‑1
                                                                                                    CCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCACCGAGTCGGTCTGCACCGTCCTCGACCCCGAGCGGTGCACACCGGCATTTGCAAGGCTTATGGGcc                                                                       >  1:4522556/1‑149
                                                                                                       GTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAG                                                                    <  1:222307/151‑1
                                                                                                           TTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGC                                                                <  1:1967760/151‑1
                                                                                                             GAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCT                                                              <  2:2389111/151‑1
                                                                                                                 CGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTTTGGGTCCAGTTGCCTCGCg                                                          >  1:212769/1‑150
                                                                                                                         ACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCT                                                  <  2:187175/151‑1
                                                                                                                             TCCTCGGCCACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCCAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAA                                              <  2:1639097/151‑1
                                                                                                                                TCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCG                                           <  2:3105179/151‑1
                                                                                                                                TCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCG                                           <  2:1184630/151‑1
                                                                                                                                    CAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCAT                                       <  1:3352505/151‑1
                                                                                                                                      ACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCGCACAGGTATTTGCAAGGGTTATGGGTCCAGTTGTCTTGGTCCTTGGCTGGAAGCGCCTTCG                                     >  2:4924067/1‑151
                                                                                                                                          GACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACT                                 >  1:2362550/1‑151
                                                                                                                                          GACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACT                                 <  1:2637749/151‑1
                                                                                                                                           ACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTT                                <  1:1518442/151‑1
                                                                                                                                           ACGGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTT                                >  1:4034641/1‑151
                                                                                                                                             GGCCATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGC                              >  2:2739504/1‑151
                                                                                                                                                 ATTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTC                          >  1:2808917/1‑151
                                                                                                                                                        CGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAG                   <  1:2413705/151‑1
                                                                                                                                                          GTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTT                 <  1:3015280/151‑1
                                                                                                                                                           TCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTA                <  1:1065491/151‑1
                                                                                                                                                            CTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAA               <  2:631231/151‑1
                                                                                                                                                             TGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAG              <  2:3588568/151‑1
                                                                                                                                                                ACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCG           <  2:4666990/151‑1
                                                                                                                                                                ACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCG           >  2:3673428/1‑151
                                                                                                                                                                  CGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGTAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGttac         >  2:1046881/1‑147
                                                                                                                                                                      CTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCA     <  2:435491/151‑1
                                                                                                                                                                       TCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAA    >  1:1917771/1‑151
                                                                                                                                                                         GGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  >  2:2204286/1‑151
                                                                                                                                                                         GGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  >  1:4794993/1‑151
                                                                                                                                                                                                                                                                                                                                
ATCATTTGATCTGCCAAAAAGCCCGGTTTTTCCGGGCTTTTGGCGCAGCCCAGGCACATCAAGCATTGATGACTCGGTCCGAACCGTCCTCGGCTACACGCCGGTCGTTGAGTCGGTCTGCACCGTCCTCGGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009974/3898401‑3898232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtcggtctgcaccgtcctcgGCAACCCGACGGCCATTGAGTCGGTCTGCACCGTCCTCGACCAGGATTGGTGCACACAGGTATTTGCAAGGCTTATGGGTCCAGTTGCCTTGCTCCTTGGCTGGAAGCGCCATCGAACTTGCGCTCAGAACAGTTAAGGCGACTCCAATC  <  CP009974/3898270‑3898121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A