Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F54 I0 R1 640 319.5 10493376 95.3% 10000187 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,215,174 G→T 21.8% pseudogene (118/2648 nt) ycgH → pseudogene; putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,215,1740GT21.8% 631.5 / 148.3 277pseudogene (118/2648 nt)ycgHpseudogene; putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base G (94/121);  new base T (33/29);  total (127/150)
Fisher's exact test for biased strand distribution p-value = 1.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01

Only 100 of 283 total aligned reads displayed.

GTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTAT  >  CP009273/1215025‑1215323
                                                                                                                                                     |                                                                                                                                                     
  ttgttAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATgaagaa                                                                                                                                                     <  2:4346687/150‑1 (MQ=255)
              tgaatgGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGaa                                                                                                                                         >  2:3078840/1‑150 (MQ=255)
               gaatgGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGaaa                                                                                                                                        <  2:754348/150‑1 (MQ=255)
                 atggatggTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATc                                                                                                                                      <  2:1384289/150‑1 (MQ=255)
                 atggatggTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATc                                                                                                                                      <  1:3966045/150‑1 (MQ=255)
                   ggatggTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCaa                                                                                                                                    >  1:535492/1‑150 (MQ=255)
                       ggTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTGATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGat                                                                                                                                >  2:5018863/1‑150 (MQ=255)
                         ttAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGataa                                                                                                                              <  1:3831198/150‑1 (MQ=255)
                          tAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGataat                                                                                                                             >  1:4067835/1‑150 (MQ=255)
                               tATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATcc                                                                                                                        <  1:4287903/150‑1 (MQ=255)
                               tATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATcc                                                                                                                        <  1:2189302/150‑1 (MQ=255)
                                aTGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCg                                                                                                                       <  1:4782051/150‑1 (MQ=255)
                                  gAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGAt                                                                                                                     <  1:3454869/150‑1 (MQ=255)
                                   aaaCTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATa                                                                                                                    <  1:886629/150‑1 (MQ=255)
                                      cTGAAAAAACTCCCCGGGTTTAGTTTGGGAATTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGt                                                                                                                 <  2:3479614/150‑1 (MQ=255)
                                        gAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGtca                                                                                                               >  2:3506704/1‑148 (MQ=255)
                                        gAAAAAACTCCCCGGGTTTAGTTTGGGACTTATAGCTCAGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTTAAATCAAAGATAATAATCCGATAAGaaa                                                                                                               >  2:4794939/1‑150 (MQ=255)
                                         aaaaaaCTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAAt                                                                                                              <  2:2107388/150‑1 (MQ=255)
                                            aaaCTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGga                                                                                                           >  2:2240762/1‑150 (MQ=255)
                                             aaCTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGgag                                                                                                          <  2:3580915/150‑1 (MQ=255)
                                             aaCTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTAATATATTAATGATGAATAATCGCCGATTGAAATAAAAGATAATAATCCGATAAGTAATGgag                                                                                                          >  2:4600724/1‑150 (MQ=255)
                                               cTCCCCTGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGagag                                                                                                        <  1:3595472/150‑1 (MQ=255)
                                               cTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGagag                                                                                                        <  1:5231431/150‑1 (MQ=255)
                                                    cGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCt                                                                                                   >  2:1132481/1‑150 (MQ=255)
                                                    cGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATACGATAAGTAATGGAGAGTATCt                                                                                                   >  2:3164221/1‑150 (MQ=255)
                                                      ggTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATTATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTaa                                                                                                 <  2:1971428/150‑1 (MQ=255)
                                                      ggTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTaa                                                                                                 >  1:3910130/1‑150 (MQ=255)
                                                        tttAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAAcc                                                                                               <  2:2502319/150‑1 (MQ=255)
                                                         ttAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCa                                                                                              <  1:2588936/150‑1 (MQ=255)
                                                           aGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACt                                                                                            <  2:1540102/150‑1 (MQ=255)
                                                           aGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACt                                                                                            >  1:418128/1‑150 (MQ=255)
                                                              ttGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGaa                                                                                         <  1:1074568/150‑1 (MQ=255)
                                                                gggACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGa                                                                                       <  1:1621962/150‑1 (MQ=255)
                                                                 ggACTTATTGCTCTGGCTGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAc                                                                                      <  2:1833415/150‑1 (MQ=255)
                                                                 ggACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAc                                                                                      >  1:1461453/1‑150 (MQ=255)
                                                                    cTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGaa                                                                                   <  1:2646277/150‑1 (MQ=255)
                                                                    cTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGaa                                                                                   >  2:4673305/1‑150 (MQ=255)
                                                                     ttATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGaaa                                                                                  <  2:4536966/150‑1 (MQ=255)
                                                                      tATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGaacg                                                                                 >  2:4000382/1‑148 (MQ=255)
                                                                        ttGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGcc                                                                               <  1:4541069/150‑1 (MQ=255)
                                                                        ttGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGcc                                                                               >  1:2507822/1‑150 (MQ=255)
                                                                           ctctGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATg                                                                            >  2:1298461/1‑150 (MQ=255)
                                                                           ctctGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATg                                                                            >  1:27853/1‑150 (MQ=255)
                                                                              tGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCtg                                                                         >  1:4441478/1‑150 (MQ=255)
                                                                                  ggTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGaa                                                                     <  2:4374105/150‑1 (MQ=255)
                                                                                    tGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAg                                                                   >  2:3319356/1‑150 (MQ=255)
                                                                                      ggaaaggCATATGCAACACAATTGTTGGATGAATATACTATAAATTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTg                                                                 <  2:2852756/144‑1 (MQ=255)
                                                                                       gTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTgg                                                                >  1:113159/1‑150 (MQ=255)
                                                                                       gTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTgg                                                                >  2:559793/1‑150 (MQ=255)
                                                                                        tAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATCTGACTGCTGACTAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGa                                                               <  1:2860955/150‑1 (MQ=255)
                                                                                         aaTGCATATGCAACATAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGAt                                                              <  2:5152159/150‑1 (MQ=255)
                                                                                         aaTGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGAt                                                              <  2:296018/150‑1 (MQ=255)
                                                                                          aTGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATg                                                             <  2:3993704/150‑1 (MQ=255)
                                                                                            gCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGAc                                                           <  1:5086809/150‑1 (MQ=255)
                                                                                            gCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGAc                                                           <  1:966418/150‑1 (MQ=255)
                                                                                              atatGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACgg                                                         >  1:5187740/1‑150 (MQ=255)
                                                                                              atatGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACgg                                                         <  1:3046606/150‑1 (MQ=255)
                                                                                               tatGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGgt                                                        <  1:1015157/150‑1 (MQ=255)
                                                                                                atGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGgtg                                                       <  1:2015529/150‑1 (MQ=255)
                                                                                                 tGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGgtgt                                                      <  1:3661348/150‑1 (MQ=255)
                                                                                                    aaCACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGTTAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGAGGGTGTAAc                                                   >  2:2706923/1‑150 (MQ=255)
                                                                                                     acacAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACt                                                  >  2:3366783/1‑150 (MQ=255)
                                                                                                     acacAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACt                                                  <  1:4711764/150‑1 (MQ=255)
                                                                                                     acacAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACt                                                  <  1:4043374/150‑1 (MQ=255)
                                                                                                      cacaATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCCTGCTGTGAAAGTGGATGACGGTGTAACTg                                                 >  2:515740/1‑150 (MQ=255)
                                                                                                       acaATTGTTTGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGAGAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCGGTGAAAGTGGATGACGGTGTAACTgg                                                >  2:2698817/1‑150 (MQ=255)
                                                                                                       acaATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTgg                                                >  1:2687322/1‑150 (MQ=255)
                                                                                                        caATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCGGTGAAAGTGGATGACGGTGTAACTGGa                                               >  2:698444/1‑150 (MQ=255)
                                                                                                         aaTTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGat                                              <  1:3078840/150‑1 (MQ=255)
                                                                                                           ttgtttGATGATTATATTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGatat                                            <  2:3711718/150‑1 (MQ=255)
                                                                                                             gttgGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGatatat                                          >  2:5050635/1‑150 (MQ=255)
                                                                                                             gttgGATGATTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGatatat                                          <  1:1199148/150‑1 (MQ=255)
                                                                                                             gttgGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGatatat                                          <  2:1572631/150‑1 (MQ=255)
                                                                                                              ttgGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGAtatata                                         <  2:4755506/150‑1 (MQ=255)
                                                                                                               tgGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATataa                                        <  2:2574098/150‑1 (MQ=255)
                                                                                                               tgGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATataa                                        <  2:1405569/150‑1 (MQ=255)
                                                                                                                ggATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATataaa                                       >  2:918899/1‑150 (MQ=255)
                                                                                                                ggATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATataaa                                       <  2:3622796/150‑1 (MQ=255)
                                                                                                                 gatgatTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATataaat                                      >  1:1362947/1‑150 (MQ=255)
                                                                                                                   tgatTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATataaataa                                    >  2:1078500/1‑150 (MQ=255)
                                                                                                                    gatTATAGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAAGAATCCGATACGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCAGGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAaataat                                   >  2:3563389/1‑150 (MQ=255)
                                                                                                                        ataGTATAATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCa                               <  2:3413968/150‑1 (MQ=255)
                                                                                                                         taGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAg                              <  1:2417742/150‑1 (MQ=255)
                                                                                                                          aGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAgt                             >  1:777025/1‑150 (MQ=255)
                                                                                                                            tataATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAgtgt                           <  1:3775573/150‑1 (MQ=255)
                                                                                                                             ataATTTCCTATATGACTGATGAAGACTCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGtgtg                          <  2:1427559/150‑1 (MQ=255)
                                                                                                                              taATTTCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGtga                         >  2:616249/1‑150 (MQ=255)
                                                                                                                              taATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGtga                         >  1:59733/1‑150 (MQ=255)
                                                                                                                                aTTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGtgatg                       <  2:4479943/150‑1 (MQ=255)
                                                                                                                                  ttCCTATATGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGAc                     >  1:3288629/1‑150 (MQ=255)
                                                                                                                                    ccTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTa                   >  1:822860/1‑150 (MQ=255)
                                                                                                                                     cTATATGACTGATGAAGAATCGCCGATTGAAATCAAATATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACAGGATAAATAAATAATGACAGTATGATGACTAg                  >  1:2715192/1‑150 (MQ=255)
                                                                                                                                     cTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAg                  >  2:837839/1‑150 (MQ=255)
                                                                                                                                      tataTGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAgt                 <  1:4898607/150‑1 (MQ=255)
                                                                                                                                       atatGACTGATGAATAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAgtg                <  2:2483495/150‑1 (MQ=255)
                                                                                                                                         atGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAgtggt              >  2:1679209/1‑150 (MQ=255)
                                                                                                                                            aCTGATGAAGAATCGCCGATTGAGATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGAt           >  1:1428380/1‑150 (MQ=255)
                                                                                                                                               gatgaAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGa        <  2:1305874/150‑1 (MQ=255)
                                                                                                                                                 tgaAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATc      >  1:1831841/1‑150 (MQ=255)
                                                                                                                                                  gaagaaTCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCt     >  2:3841816/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGACGAAAGCCATGCTGTGAAAGTGGATGACGGTGTAACTGGATATATAAATAATGCCAGTGTGATGACTAGTGGTGATGGATCTTAT  >  CP009273/1215025‑1215323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A