Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F86 I0 R1 593 297.4 9515568 94.4% 8982696 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,997,314 G→T 39.7% intergenic (‑227/‑39) fliC ← / → fliD flagellar filament structural protein (flagellin)/flagellar filament capping protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,997,3140GT39.7% 218.4 / 238.0 201intergenic (‑227/‑39)fliC/fliDflagellar filament structural protein (flagellin)/flagellar filament capping protein
Reads supporting (aligned to +/- strand):  ref base G (69/52);  new base T (45/34);  total (115/86)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 205 total aligned reads displayed.

TATCGTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAA  >  CP009273/1997165‑1997463
                                                                                                                                                     |                                                                                                                                                     
tATCGTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCg                                                                                                                                                       >  1:1707160/1‑150 (MQ=255)
    gTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTAt                                                                                                                                                   >  1:3831941/1‑150 (MQ=255)
     tCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTAtt                                                                                                                                                  <  2:1439537/150‑1 (MQ=255)
       tGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCg                                                                                                                                                >  2:3826324/1‑150 (MQ=255)
       tGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCg                                                                                                                                                >  2:2653111/1‑150 (MQ=255)
        gTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGt                                                                                                                                               <  2:177576/150‑1 (MQ=255)
        gTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGt                                                                                                                                               >  1:1375972/1‑150 (MQ=255)
        gTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCACGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGt                                                                                                                                               >  1:2201143/1‑150 (MQ=255)
         tCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGtt                                                                                                                                              <  2:1345494/150‑1 (MQ=255)
          cGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGttt                                                                                                                                             >  1:295558/1‑150 (MQ=255)
          cGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGttt                                                                                                                                             >  1:3464845/1‑150 (MQ=255)
           gTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGtttt                                                                                                                                            <  2:2757352/150‑1 (MQ=255)
            tAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTa                                                                                                                                           >  1:21652/1‑150 (MQ=255)
            tAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTa                                                                                                                                           <  1:337426/150‑1 (MQ=255)
             aaaaCAACCATTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTAc                                                                                                                                          <  1:392113/150‑1 (MQ=255)
              aaaCAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGCCCGATAACCCCGGTATTCGTTTTACg                                                                                                                                         <  2:845265/150‑1 (MQ=255)
                  aacCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTc                                                                                                                                     <  1:3878949/150‑1 (MQ=255)
                   acCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCg                                                                                                                                    >  1:1057351/1‑150 (MQ=255)
                    ccTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGa                                                                                                                                   >  2:1749807/1‑150 (MQ=255)
                      tttAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGaaa                                                                                                                                 <  1:3334176/150‑1 (MQ=255)
                       ttAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAg                                                                                                                                <  2:2467031/150‑1 (MQ=255)
                       ttAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAg                                                                                                                                >  1:2440275/1‑150 (MQ=255)
                          gAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGaga                                                                                                                             >  2:2183592/1‑148 (MQ=255)
                           aaTTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATaa                                                                                                                            <  2:2903853/150‑1 (MQ=255)
                           aaTTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTGTACGTGTCGAAAGATaa                                                                                                                            >  2:3147001/1‑150 (MQ=255)
                           aaTTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATaa                                                                                                                            <  1:3895338/150‑1 (MQ=255)
                                ttttCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGa                                                                                                                       >  2:4218037/1‑150 (MQ=255)
                                 gttCAAAAACAGCCCGGTTGTGTTCGTCGCCGACATACGCGTTACTCTGCCCCTTATGCCCGCTATTAAAAAAAACAATTACCCGGACACTTTGCGCAATTCAGACCGAGAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGaa                                                                                                                      <  2:3707428/149‑1 (MQ=255)
                                        aaCAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCAt                                                                                                               <  2:4248375/150‑1 (MQ=255)
                                        aaCAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCAt                                                                                                               <  2:1647778/150‑1 (MQ=255)
                                               aTTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGt                                                                                                        <  2:2832567/150‑1 (MQ=255)
                                               aTTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGt                                                                                                        <  1:3825960/150‑1 (MQ=255)
                                                    ttGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTc                                                                                                   <  1:4525977/150‑1 (MQ=255)
                                                    ttGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTc                                                                                                   >  2:3499753/1‑150 (MQ=255)
                                                     tGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAAGTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCa                                                                                                  <  1:30736/150‑1 (MQ=255)
                                                      gTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCAt                                                                                                 <  1:1061356/150‑1 (MQ=255)
                                                       ttAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATc                                                                                                >  1:5195/1‑150 (MQ=255)
                                                        tAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCg                                                                                               <  1:2322253/150‑1 (MQ=255)
                                                        tAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCg                                                                                               >  2:1509332/1‑150 (MQ=255)
                                                          gTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCt                                                                                             <  1:3530281/150‑1 (MQ=255)
                                                          gTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCt                                                                                             <  1:4551811/150‑1 (MQ=255)
                                                            cGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTgg                                                                                           >  2:3798761/1‑150 (MQ=255)
                                                               cGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGACATCGCATGGCAAGTATTTCATCGCTGGGAg                                                                                        >  2:1306418/1‑150 (MQ=255)
                                                                gAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTACACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGt                                                                                       <  2:2403668/150‑1 (MQ=255)
                                                                gAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGt                                                                                       >  1:4506484/1‑150 (MQ=255)
                                                                  aaTACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCg                                                                                     >  2:4510957/1‑150 (MQ=255)
                                                                   aTACTCTTTTCTCTGCCCCTTAGTCCCGCTATTAAAAAAAACAATTACACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCgg                                                                                    <  2:4127628/150‑1 (MQ=255)
                                                                    tACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCggg                                                                                   >  1:262025/1‑150 (MQ=255)
                                                                     aCTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGt                                                                                  >  1:3845327/1‑150 (MQ=255)
                                                                      ctctTTTCTCTGCCCCGTATTCCCGCTATTAAAAAAAACAATTAAACGTCAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTc                                                                                 >  2:4509915/1‑150 (MQ=255)
                                                                       tctTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAAGTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCa                                                                                <  1:131221/150‑1 (MQ=255)
                                                                        ctTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAg                                                                               >  1:2049971/1‑150 (MQ=255)
                                                                          tttCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGt                                                                             <  2:4734143/150‑1 (MQ=255)
                                                                            tctcTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCt                                                                           <  2:4670234/150‑1 (MQ=255)
                                                                            tctcTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCt                                                                           <  1:1139105/150‑1 (MQ=255)
                                                                               ctGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGa                                                                        >  1:4739764/1‑150 (MQ=255)
                                                                               ctGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGa                                                                        >  2:1316848/1‑150 (MQ=255)
                                                                                tGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGAt                                                                       >  1:1734329/1‑150 (MQ=255)
                                                                                 gCCCCTGATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAAGTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGAtt                                                                      <  2:4034966/150‑1 (MQ=255)
                                                                                   cccTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTa                                                                    >  2:893321/1‑150 (MQ=255)
                                                                                     cTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAg                                                                  <  1:4056320/150‑1 (MQ=255)
                                                                                     cTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAg                                                                  <  2:1057368/150‑1 (MQ=255)
                                                                                      ttATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGt                                                                 >  2:2123539/1‑150 (MQ=255)
                                                                                       tATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGtt                                                                <  2:4418083/150‑1 (MQ=255)
                                                                                              gCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCt                                                         <  2:3605168/150‑1 (MQ=255)
                                                                                              gCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCt                                                         >  1:4355988/1‑150 (MQ=255)
                                                                                               cTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCtt                                                        <  1:3294199/150‑1 (MQ=255)
                                                                                                tATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTg                                                       <  2:3591084/150‑1 (MQ=255)
                                                                                                    aaaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAg                                                   >  2:1119996/1‑150 (MQ=255)
                                                                                                    aaaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAg                                                   <  1:2503282/150‑1 (MQ=255)
                                                                                                     aaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGc                                                  >  2:147869/1‑150 (MQ=255)
                                                                                                       aaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCt                                                <  2:3285933/150‑1 (MQ=255)
                                                                                                        aaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTc                                               <  1:3701333/150‑1 (MQ=255)
                                                                                                        aaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTc                                               >  1:2412804/1‑150 (MQ=255)
                                                                                                            cAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCAccg                                           <  1:1447453/150‑1 (MQ=255)
                                                                                                             aaTTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCAccgc                                          >  2:4704875/1‑150 (MQ=255)
                                                                                                               ttAACCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCAccgccg                                        <  2:2574467/150‑1 (MQ=255)
                                                                                                                 aaaCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCcgcg                                      <  1:3378461/150‑1 (MQ=255)
                                                                                                                 aaaCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCcgcg                                      <  1:3378246/150‑1 (MQ=255)
                                                                                                                  aaCGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCgcgc                                     >  1:4128758/1‑150 (MQ=255)
                                                                                                                  aaCGTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCgcgc                                     >  1:4575165/1‑150 (MQ=255)
                                                                                                                   aCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCa                                    >  1:2456264/1‑150 (MQ=255)
                                                                                                                     gTAAACTTTGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCaaa                                  >  2:3997962/1‑150 (MQ=255)
                                                                                                                     gTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCaaa                                  >  2:4069471/1‑150 (MQ=255)
                                                                                                                        aaCTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAg                               >  1:1934040/1‑150 (MQ=255)
                                                                                                                        aaCTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAg                               <  1:1001424/150‑1 (MQ=255)
                                                                                                                           tttGCGCACTTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGTTAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGa                            <  1:696640/150‑1 (MQ=255)
                                                                                                                           tttGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGa                            >  1:3278192/1‑150 (MQ=255)
                                                                                                                             tGCGCAATTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACg                          >  1:1025691/1‑150 (MQ=255)
                                                                                                                             tGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACg                          >  1:900613/1‑150 (MQ=255)
                                                                                                                                gcATTTCAGACCTATAACCCCGTTATTCTTTTTACGTGTCTAAATATAAACGAAAATCGCTTGGAAATTATTAAATCGCTGGTAGTCGGGTCTGGTCTGGATTTAAGTTCCATCCTTGATACCCTCACCGCCGCGAAAAACGCGACGCTa                       <  2:2008612/150‑1 (MQ=255)
                                                                                                                                  aaTTCAGACCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAc                     >  1:3924847/1‑150 (MQ=255)
                                                                                                                                  aaTTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAc                     >  2:1060277/1‑150 (MQ=255)
                                                                                                                                  aaTTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAc                     >  1:3230899/1‑150 (MQ=255)
                                                                                                                                    ttCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAAccc                   >  2:182126/1‑150 (MQ=255)
                                                                                                                                         aCCGATAACCCCTGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCAtt              >  2:3391783/1‑150 (MQ=255)
                                                                                                                                           ctaTACCCCCGTTATTTGTTTTAGGTGTCTAATTATAAAAGTAAATCGCATGGAATGTTTTTAATGGGTGGTTGTGGGGTCTGTTCTGTATTTAAGTTCCATCCTTTATAGCCACACCGCCGCGAAAAACGCGACGCTAACCCCCATTTc            <  1:273165/148‑1 (MQ=255)
                                                                                                                                            gATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCa           >  2:221751/1‑150 (MQ=255)
                                                                                                                                                 cccgGGTATTCGTTTTACGTGTCGAAACATAAAAGGAAATCGCTGGGAATGTATTTCTTCGCTGGGAGTCGGGTCAGGTGTGGATTTAAGTTCAATCCTTGATAGCCTCACCGCCGCGAAAAAAGCGACGCTAACCCCCATTTCAAATCa      <  2:3369893/150‑1 (MQ=255)
                                                                                                                                                     ggTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCaa  >  2:2894300/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TATCGTCTGTCGTAAAACAACCTTTAGAATTTTTTTCAAAAACAGCCATTTTTTGTTAGTCGCCGAAATACTCTTTTCTCTGCCCCTTATTCCCGCTATTAAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAA  >  CP009273/1997165‑1997463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A