Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F10 I0 R1
|
85 |
228.3 |
8665814 |
85.8% |
7435268 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,303,607 |
A→C |
6.9% |
L93R (CTG→CGG) |
ada ← |
fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,303,607 | 0 | A | C | 6.9%
| 619.2
/ 2.2
| 234 | L93R (CTG→CGG) | ada | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (109/96); new base C (22/3); total (131/103) |
| Fisher's exact test for biased strand distribution p-value = 9.61e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 240 total aligned reads displayed.
TTCGCGCAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTGGC > CP009273/2303459‑2303755
|
gcAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGa < 2:1679523/149‑1 (MQ=255)
cAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGac > 2:1021392/1‑149 (MQ=255)
cAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCAGTTCCAGCAGTCGac > 2:1130057/1‑149 (MQ=255)
aaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGacac > 2:606915/1‑149 (MQ=255)
aaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGacac > 2:1268753/1‑149 (MQ=255)
aaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGGCGGCTAAGGCTTCCAGCGTTACAGGCGTGTCCTGTTCCAGCAGTCGacac > 2:1410117/1‑149 (MQ=255)
aCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACAcg > 2:4111318/1‑149 (MQ=255)
aCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACATGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTTCAGTTACAGCAGGAGACAcg > 1:2657410/1‑149 (MQ=255)
aGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTggg < 1:3328752/149‑1 (MQ=255)
aGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACCCGgggg > 1:2984114/1‑149 (MQ=255)
aGCGCGCCAGGCCTGGTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGGAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTggg < 2:4296711/149‑1 (MQ=255)
gcgcgcCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGt < 2:3947187/149‑1 (MQ=255)
ccAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTT‑CAGCGTTACAGGCGTTTCCTGTTCCCGCAGTCGACCCGCGGGGGTGTtttt > 2:1904684/1‑149 (MQ=255)
cAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGAtttt > 1:2478157/1‑149 (MQ=255)
aGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTACAGCAGTCGACACGCGTGGGTGATTTTa > 1:306555/1‑149 (MQ=255)
ggCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACACCCGTGGGGGATTTTAt > 1:158869/1‑149 (MQ=255)
ggCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTAt > 2:2152055/1‑149 (MQ=255)
ggCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTAt > 2:2149844/1‑149 (MQ=255)
ggCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTACTGTTCCAGCCGGCGCCACCCGGGGGTGAtgtttt > 1:3679844/1‑147 (MQ=255)
ccTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATcc < 2:1691761/149‑1 (MQ=255)
ccAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCGGTTCCAGCCGTCGACACGCGTGGGTGATTTTATCCAACCGAt > 1:647399/1‑149 (MQ=255)
aGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGt < 2:320865/149‑1 (MQ=255)
cTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTACTGTTCCACCAGTCGACACGCGTGGGTGATTTTATACAACCGATGTTGc > 1:668102/1‑149 (MQ=255)
ttAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTg < 2:915122/149‑1 (MQ=255)
gCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCa > 2:226234/1‑149 (MQ=255)
gCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCa < 1:557973/149‑1 (MQ=255)
gCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCa < 1:49649/149‑1 (MQ=255)
cGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAACTGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCAt < 1:3605740/149‑1 (MQ=255)
tCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTTGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTg < 1:2191803/149‑1 (MQ=255)
tCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTg < 2:1388450/149‑1 (MQ=255)
aTTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTACAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGc > 1:3960294/1‑149 (MQ=255)
tCCGGTAGTCGCTTGAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCtt < 1:448248/149‑1 (MQ=255)
ccGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCttt < 2:4049735/149‑1 (MQ=255)
ggTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATACAAACGATTTTTCTGGGCATTGGCttttt > 1:596617/1‑149 (MQ=255)
ggTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCAGTTACAGCCGTCGACACCCCGGGGTGATTTTATAAAAACCCGGTTTCTGGGGCTTGGGttttt > 1:3679933/1‑149 (MQ=255)
tAGTCGCTTTAAACAACCGATGTAGATGACATGGACTCATCGCCACCTGGTCGGCTTCGGCTGCCAGCTTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCt < 1:2222702/149‑1 (MQ=255)
gTCGCTTTAAAAAACCGATGTAGATGAAATGGACTCATCGCCACCAGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTGCACCACTCGACACCCCTGGGGGTTTTTATACAACCCAAGTTGAGGGGCCTTGGGTTTTTTTgg > 1:3318196/1‑149 (MQ=255)
gCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTg > 2:2129473/1‑149 (MQ=255)
aaaCAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAAc > 2:1739897/1‑149 (MQ=255)
aacaacCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACg > 2:1297978/1‑149 (MQ=255)
aacCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGttt > 2:3214822/1‑149 (MQ=255)
cGAGGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCa < 2:3785810/149‑1 (MQ=255)
gATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAg < 2:2915541/149‑1 (MQ=255)
gATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAg < 1:748168/149‑1 (MQ=255)
gATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAg < 2:759069/149‑1 (MQ=255)
aTGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAgg < 2:3989556/149‑1 (MQ=255)
tGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGGTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAggg > 2:3078722/1‑149 (MQ=255)
gTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAgggg > 2:2925967/1‑149 (MQ=255)
gTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAgggg < 1:1437375/149‑1 (MQ=255)
gTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGGGGGTGATTTTATCCAACCGATGTTGCTGGGCCTTGGCTTTTTCTGGCTGACAAAGTTTGCAgggg > 2:55241/1‑149 (MQ=255)
tAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGc < 2:3702304/149‑1 (MQ=255)
tAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGc > 2:1393342/1‑149 (MQ=255)
tAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGc < 2:3123506/149‑1 (MQ=255)
aGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCGGTTCCAGCAGTCGACACGCGGGGGTGGTTTTATACAACCGATGTTGCTGGGCCTTGGGTTTTTATGGGTGACAACGTTTGCAgggggg > 1:1090382/1‑147 (MQ=255)
gATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGa > 2:1753128/1‑149 (MQ=255)
aaaTGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGc > 2:3571189/1‑149 (MQ=255)
aTGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTACAGCAGTCGACACGCGTGGGTGATTTTATCCAACCCATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCa > 1:1699957/1‑149 (MQ=255)
tGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCCTTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAATCCAg > 2:85916/1‑149 (MQ=255)
ggACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAgc < 1:1680884/149‑1 (MQ=255)
ggACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAgc < 1:2042920/149‑1 (MQ=255)
gACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAgcg > 2:3163311/1‑149 (MQ=255)
gACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAgcg > 2:3383034/1‑149 (MQ=255)
aCTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAgcgg > 2:2625099/1‑149 (MQ=255)
aCTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGGTTGCAGGGGCGAAAGCCAgcgg > 2:3661328/1‑149 (MQ=255)
cATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGa < 2:1057045/149‑1 (MQ=255)
tCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAAACGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGt > 2:1622523/1‑149 (MQ=255)
gCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTTTTTTTATACAAACGATGTTGCTGGGCCTTTGCTTTTTATGGCTGACAACGTTTTCAGGGGCGAAAGCCAGCGGCGAGTGc > 1:1241645/1‑149 (MQ=255)
gCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCAGTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGc > 2:1459212/1‑149 (MQ=255)
ccACCTGGTCGGATATGGCTTCCAGGTTTACTGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTTTTTTTATCCAACCGTTTTTGGGGGGCTTTGGTTTTTTCTGGCTGACAAGGTTTGCTGGGGCGAAAGCCAGCGGCGAGTGcc < 1:101425/149‑1 (MQ=255)
cACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACACGCGTGGGTGATTTTATACAACCGATGTTTCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCt > 1:2357032/1‑149 (MQ=255)
aCCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAAAGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTc > 2:3505903/1‑149 (MQ=255)
ggTCGGCTAAGGCTTCCAGCGTTACAGGCGTGTCCTGTTCCATCCGTCGACACGCGGGGGTGATTTTATCCCACCGATGTTGCTGGGCATTGGCTTTTTCTTGCTGACAACGTTTTCAGGGGCGAAATCCACCGGCGAGTGCCTCGCtt > 1:279106/1‑148 (MQ=255)
gTCGGCTACGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGAATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTgg < 1:3927335/149‑1 (MQ=255)
gTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTACGGGTCCAGCAGGCGACACCCGTGGGTGATTTTATGCAACCGATGTTGGTGGGCCTTGGCTTTTTATGGCTGACAAACGTTGCAGGGGCGAAAGCCACCGGCGCGTGCCTCGCTgg > 1:4067561/1‑149 (MQ=255)
gCTAAGGCTTCCAGCGTTACAGGCGTTTGCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCGGGCAtt > 1:3902784/1‑149 (MQ=255)
tAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACCCGGGGGTGATTTTATCCAACCGATGTTGCTGGGCATTTGCTTTTTTTGGCTGACAACCTTTTCAGGGGCGAAATCCAGCGGCGAGTGCCACGCTGGCAtttt > 1:2607614/1‑148 (MQ=255)
aaGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCCTTGGCTTTTTCTGGCTGACAACGTTTTCAGGGGCGAAAGCCAGCGGCGAGTGCCACGCTGGCAttttc > 1:2385318/1‑147 (MQ=255)
aaGGCTTCCAGCGTTACAGGCGTGTCCTGTTCCCGCCGTCGACACGCGTGGGTGATTTTATGCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGTCAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCAttttc > 1:4182889/1‑147 (MQ=255)
aGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTTCGGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCACCGGCGAGTGCCACGCTGGCATTTTCg > 1:3470011/1‑149 (MQ=255)
aGGCTTCCAGCGTTACAGGCGTTTACTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAAAGTTTTCAGGGGCGAAATCCAGCGGCGAGTTCCTCGCTGGCATTTggg > 2:2327596/1‑147 (MQ=255)
ggCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGGCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCGGGGCATTGGCTTTTTCTGGCTGACCACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGt > 2:691527/1‑149 (MQ=255)
cTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCAATGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAg > 1:4133123/1‑149 (MQ=255)
ttCCAGCTTTACCGGGGTTTCCTGTTCCAGCAGTCGACACGGGTGGGTGTTTTTATCCACCCGATGGTGCGGGGCATTGGCTTTTTCGGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGa < 1:1324796/149‑1 (MQ=255)
ttCCAGCGTTACCGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTTATTTTATCCACCCGATGTTGCTGGGCATTGGCTTTTTCTGGCTCACAACTTTTGCTGGGGCTAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGa < 1:1324716/149‑1 (MQ=255)
aGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGga > 2:2477659/1‑149 (MQ=255)
cGTTACTGGCTTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGTTGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGgaga < 1:1984190/149‑1 (MQ=255)
cGTTACCGGCGTTTCCTTTTCCAGCTGTCGACACGCGTGGGTTATTTTATCCAACCGATGGTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGgaga < 2:3338849/149‑1 (MQ=255)
cGTTACCGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGgaga < 1:2501801/149‑1 (MQ=255)
ggCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTc > 2:2539547/1‑149 (MQ=255)
gCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCTGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTcc < 1:1022239/149‑1 (MQ=255)
cGTTTCCTGTTCCAGCCGGCGACCCGGGTGGGTGATTTTATCCAACCGTTGTGGCTGGGCATTGGCTTTTTCTGGCTGACACCGTTTGCCGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTccc < 1:1161007/149‑1 (MQ=255)
cGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCACCCGATGTTGCTGGGCTTTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTccc < 2:1409861/149‑1 (MQ=255)
cGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGTGGTGGCGGGGCATTGGCTTTTTCTGGCTGACAAGGTTTGCCGGGGCCAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTccc < 1:1160927/149‑1 (MQ=255)
tttCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACACCGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGc > 2:1971071/1‑149 (MQ=255)
tttCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGc > 2:3591593/1‑149 (MQ=255)
tttCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGc > 1:1938508/1‑149 (MQ=255)
ttCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCAt > 1:3207723/1‑149 (MQ=255)
tCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATg < 1:2513972/149‑1 (MQ=255)
agcagTCGACCCGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGGAGAAGGAGACGTTTTCCCGCAAAGCATGTCt > 2:887286/1‑149 (MQ=255)
cagTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTgg > 1:2192846/1‑149 (MQ=255)
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TTCGCGCAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACGTTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTGGC > CP009273/2303459‑2303755
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
