Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F17 I0 R1
|
93 |
279.2 |
9183790 |
95.6% |
8779703 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,303,607 |
A→C |
10.3% |
L93R (CTG→CGG) |
ada ← |
fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,303,607 | 0 | A | C | 10.3%
| 754.9
/ 11.8
| 281 | L93R (CTG→CGG) | ada | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (107/132); new base C (37/2); total (144/137) |
| Fisher's exact test for biased strand distribution p-value = 9.64e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 292 total aligned reads displayed.
TTCGCGCAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTGGC > CP009273/2303459‑2303755
|
ttCGCGCAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCcagca < 2:179661/149‑1 (MQ=255)
ttCGCGCAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCcagca > 2:3837844/1‑149 (MQ=255)
aaaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGaca < 2:1035663/149‑1 (MQ=255)
aaaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGaca > 2:4080635/1‑149 (MQ=255)
aaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGacac > 2:4499427/1‑149 (MQ=255)
aaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGGTTCCTGTTCCAGCCGTCGacac > 2:508192/1‑149 (MQ=255)
aaCGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACAGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGacac > 2:3335224/1‑149 (MQ=255)
ggCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACAcgcg > 2:2202188/1‑149 (MQ=255)
gcgcgcCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACCCGCGTGGGt > 1:4167167/1‑149 (MQ=255)
cgcgcCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTg < 2:613459/149‑1 (MQ=255)
gcCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGAtt < 2:4369396/149‑1 (MQ=255)
ccAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGAttt < 2:3780225/149‑1 (MQ=255)
cAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTGCTGTTGCAGCCGGAGACACCCGGGGGTGTtttt > 1:808926/1‑149 (MQ=255)
cAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACACGCGTGGGTGTtttt > 1:4448324/1‑149 (MQ=255)
ggCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGCTGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACACGCGTGGGGGATTTTAt > 1:2757942/1‑149 (MQ=255)
ggCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCCGTCGACACGCGTGGGTGATTTTAt > 1:2553421/1‑149 (MQ=255)
gCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATc < 1:4371558/149‑1 (MQ=255)
ccTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATcc < 1:203079/149‑1 (MQ=255)
ccTGGTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATcc < 2:2851275/149‑1 (MQ=255)
cTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCa > 2:1394766/1‑149 (MQ=255)
tGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCaa < 1:3254865/149‑1 (MQ=255)
gTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAAc < 2:3099190/149‑1 (MQ=255)
gCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGa < 2:2548523/149‑1 (MQ=255)
gCCAGGCTTGAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGa < 2:4203680/149‑1 (MQ=255)
aGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGt < 1:1137133/149‑1 (MQ=255)
ggCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGtt < 1:1700438/149‑1 (MQ=255)
cTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGc < 1:896390/149‑1 (MQ=255)
tttAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCt < 2:3578064/149‑1 (MQ=255)
tttAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCt < 1:2141382/149‑1 (MQ=255)
ttAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTg > 2:4007434/1‑149 (MQ=255)
tAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTgg < 2:428280/149‑1 (MQ=255)
aGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTGCTGTTACAGCAGTGGACACGCGTGGGGGTTTTTATACCACCGATGTTTCTggg > 1:1586387/1‑149 (MQ=255)
cGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCAt < 2:854735/149‑1 (MQ=255)
tCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTg < 1:4539006/149‑1 (MQ=255)
tCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTg < 2:1445865/149‑1 (MQ=255)
tCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTg < 1:689708/149‑1 (MQ=255)
cATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCAGTTCCAGCAGTCGACACGCCTGGGTGATTTTATACAACCCATGTTGCTGGGCAtttg > 1:3703022/1‑147 (MQ=255)
ttCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCt > 2:3976777/1‑149 (MQ=255)
ttCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATACAAACGATGTTGCTGGGCATTGGCt > 1:648854/1‑149 (MQ=255)
ttCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTACTGTTCCAGCCGTCGACACGCGTGGGTGATTTTATACAACCGATGTTGGGGGGCCTTGGCt > 1:3994884/1‑149 (MQ=255)
tCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTGCAGCCGTCGACACGCGTGGGTGATTTTATACAAACGATGTTGCTGGGGATTGGCtt > 1:1348156/1‑149 (MQ=255)
ggTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCttttt < 1:2670841/149‑1 (MQ=255)
ggTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCttttt < 2:3025290/149‑1 (MQ=255)
ggTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCttttt < 1:2740085/149‑1 (MQ=255)
ggTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCttttt < 1:4514289/149‑1 (MQ=255)
gTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTc > 2:1571545/1‑149 (MQ=255)
aGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTg < 1:116924/149‑1 (MQ=255)
aGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTACTGTTCCAGCCGTCGACACCCGTGGGTGCTGTTATCCAACCGATGTTGCTGGGCAGTGGCTTTTTCTg > 1:2409389/1‑149 (MQ=255)
cTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGa > 2:2738252/1‑149 (MQ=255)
tAAACCACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACaa < 2:4445515/149‑1 (MQ=255)
caacCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑tt < 1:1914838/149‑1 (MQ=255)
aacCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑ttt < 2:2019711/149‑1 (MQ=255)
aacCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCCATGGTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑ttt > 2:3245147/1‑149 (MQ=255)
acCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTGCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATACAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTg > 1:442085/1‑149 (MQ=255)
ccGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGc > 1:1114313/1‑149 (MQ=255)
aTGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAgg > 1:1813358/1‑149 (MQ=255)
aTGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGGGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAgg > 1:4115546/1‑149 (MQ=255)
gTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAgggg < 2:2464481/149‑1 (MQ=255)
tAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGc < 2:154100/149‑1 (MQ=255)
aGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGCTGTTGCGGGGCAGTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCg > 1:3173473/1‑149 (MQ=255)
aGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCg > 2:3198434/1‑149 (MQ=255)
gATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACCACG‑GTTGCAGGGGCGa > 1:4551916/1‑149 (MQ=255)
tGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTGTACTGTTCCAGCCGGCGACCCGCGGGGGGGATTTTATACAACCCATGTTTCTGGGCATGGGCTTTTTATTGCTGACAACG‑TTTTGAGGGGCGaaa > 1:108344/1‑149 (MQ=255)
gAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAg < 1:151699/149‑1 (MQ=255)
gAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAg < 2:3449410/149‑1 (MQ=255)
aaTGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGcc > 2:4131622/1‑149 (MQ=255)
aaTGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGcc < 1:3547145/149‑1 (MQ=255)
aTGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTATGGCTGACAACG‑TTTGCAGGGGCGAAAGCCa > 1:3028852/1‑149 (MQ=255)
gACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTGTCCGGGTCCAGCCGGCGACCCCCGGGGGTGATTTTATCCAACCGATGGTTGGGGGCATTGGCTTTTTATGGCTGACAACG‑TTTGCAGGGGCGAAAGCCcgcg > 1:3097102/1‑149 (MQ=255)
tCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGt > 2:1876212/1‑149 (MQ=255)
tCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGt > 2:1605776/1‑149 (MQ=255)
tCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGt > 2:4561570/1‑149 (MQ=255)
ccACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTTGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTTcc > 2:471094/1‑149 (MQ=255)
ccACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGcc > 2:186038/1‑149 (MQ=255)
aCCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCGGTTACAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTc > 1:335453/1‑149 (MQ=255)
ggTCGGCTAAGGCTTCCAGCGTTACTGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGTTGTTGCTGGGAATTGGCTTTTTCTGGCTGACAACG‑TTTGCTGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTg < 1:3821507/149‑1 (MQ=255)
ggTCGGCTAAGGCTTCCAGCGTTACAGGCGTGTCCTGTTCCAGCCGTCGACACGCGGGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTATGGCTGACAACG‑TTTGCAGGGGCGAAATCCAGCGGCGAGTGCCTCGCTg > 1:2873973/1‑149 (MQ=255)
ggcGGCTAAGGCTTCCAGCGTAACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCTAAAGCCAGCGGCGAGTGCCTCGCTgg < 2:3866564/147‑1 (MQ=255)
ggCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCTTTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCTAAAGCCAGCGGCGAGTGCCTCGCTGGCAt < 1:2628629/149‑1 (MQ=255)
gCTAAGGCTTCCAGCGTTACAGGCGTTTGCTGTTCCAGCAGTCGCCACCCGTGGGTGTTTTTTTACAACCGATGTTGCTGGGCATTTGCTTTTTGTGGCTGTCAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGGGTGCCTCGCTGGCagt > 1:4280909/1‑147 (MQ=255)
gCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCAtt > 2:173127/1‑149 (MQ=255)
cTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTGTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCAttt > 2:1575283/1‑149 (MQ=255)
tAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTg > 2:2946210/1‑149 (MQ=255)
aaGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGc > 2:3160766/1‑149 (MQ=255)
gTTACAGGCGTTTCCTGTTCCAGCCGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGAc < 1:2233929/149‑1 (MQ=255)
gTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGAc > 2:2965400/1‑149 (MQ=255)
ttACAGGCGTTTGCTGTTCCAGAAGTCGAAACGCGTGGGTGATTTTATACAACCGATTTTGCTGGGCATTTGCTTTTTAGTGCTGACAAAG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACg > 2:1314076/1‑149 (MQ=255)
ttACAGGCGTTTCCAGTTCCAGCAGTCGACACGCGTGGGTTATTTTATCCAAACGATGTTTCTGGGCAATTGCTTTTTCTTGCTGACAACG‑TTTGCAGGGGCGAAATCCAGCGGCGAGTTACTCGCTGGCATTTTCGTAGAAGGAGAcc > 2:1190951/1‑148 (MQ=255)
actggCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTTATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGATGAAAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGtt < 2:68521/146‑1 (MQ=255)
cAGGCTTTTCCTGTTCCAGCAGTCGACCCGGGGGGTTGATTTTATCCACCCGATGTTGCTGGGCATTGGATTTTTCTGGCTGACAACG‑TTGGCTGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGttt < 1:999457/149‑1 (MQ=255)
cAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTTATTTTATCCAACCGATGTTGCTGGGCTTGGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGttt < 1:3304958/149‑1 (MQ=255)
cggggTTTCCTGTTCCAGCTGTCCCCCCGGGTGGGTTATTTTATCCAACGGTTGTTGGTGGGCTTTGGTTTTTTGGGGTTGACAACG‑TTGGCCGGGGCGAACGCCCGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGtttt < 1:508192/145‑1 (MQ=255)
aGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGTGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGtttt < 1:4040623/149‑1 (MQ=255)
ggCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGAGGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTGGCTGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTc < 1:1026543/149‑1 (MQ=255)
gTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCa < 2:601883/149‑1 (MQ=255)
ttCCCGCTGTCGACCGGGGTGGGTTTTTTTAACCAACCTTTGTTGGGGGGCTTTGGCTTTTTCTGGCTGA‑AACGTTTTGCGGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCAt < 1:1571438/149‑1 (MQ=255)
ccAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGt < 2:3688786/149‑1 (MQ=255)
agcagTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCt > 1:3385058/1‑149 (MQ=255)
gcagGCGACCCGGGGGGGTGATTTTCACCTACGGTGGGTGGGGGGATTTGGTTTTTGGTGGCGGACATGG‑TTTGCTGGGGCGAACCCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTg < 1:2307227/149‑1 (MQ=255)
agTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTGgc > 2:1116457/1‑149 (MQ=255)
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TTCGCGCAAACGGCGAGCGCGCCAGGCCTGTTGCCAGGCTTTAGGCGTCATTCCGGTAGTCGCTTTAAACAACCGATGTAGATGAAATGGACTCATCGCCACCTGGTCGGCTAAGGCTTCCAGCGTTACAGGCGTTTCCTGTTCCAGCAGTCGACACGCGTGGGTGATTTTATCCAACCGATGTTGCTGGGCATTGGCTTTTTCTGGCTGACAACG‑TTTGCAGGGGCGAAAGCCAGCGGCGAGTGCCTCGCTGGCATTTGCGTAGAAGGAGACGTTTTCCCGCAAAGCATGTCTGGC > CP009273/2303459‑2303755
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
