Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F342 I0 R1 1331 225.9 7641038 95.8% 7320114 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,796,526 A→T 17.4% I324I (ATT→ATA)  waaB ← UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,796,5260AT17.4% 888.3 / 165.9 344I324I (ATT→ATA) waaBUDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
Reads supporting (aligned to +/- strand):  ref base A (159/125);  new base T (33/27);  total (192/152)
Fisher's exact test for biased strand distribution p-value = 8.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 355 total aligned reads displayed.

AATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGACAAG  >  CP009273/3796379‑3796673
                                                                                                                                                   |                                                                                                                                                   
aaTTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGa                                                                                                                                                     >  1:1180731/1‑148 (MQ=255)
 aTTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGaa                                                                                                                                                    >  1:3279642/1‑148 (MQ=255)
 aTTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTAACTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGaa                                                                                                                                                    <  1:1546395/148‑1 (MQ=255)
     aGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTc                                                                                                                                                >  1:460452/1‑148 (MQ=255)
     aGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTc                                                                                                                                                <  2:1640517/148‑1 (MQ=255)
     aGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTc                                                                                                                                                <  2:1920294/148‑1 (MQ=255)
     aGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTc                                                                                                                                                >  1:1734610/1‑148 (MQ=255)
       aaaCTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCAc                                                                                                                                              >  2:3468758/1‑148 (MQ=255)
        aaCTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCAcc                                                                                                                                             <  1:2457714/148‑1 (MQ=255)
        aaCTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCAcc                                                                                                                                             <  2:3806685/148‑1 (MQ=255)
        aaCTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCGTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCAcc                                                                                                                                             <  1:538118/148‑1 (MQ=255)
          cTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTg                                                                                                                                           <  1:3293880/148‑1 (MQ=255)
          cTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTg                                                                                                                                           >  1:1885596/1‑148 (MQ=255)
              gTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCtat                                                                                                                                       <  2:2277763/148‑1 (MQ=255)
               tttCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCtata                                                                                                                                      <  1:499070/148‑1 (MQ=255)
                ttCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCtatat                                                                                                                                     >  1:1016124/1‑148 (MQ=255)
                  ccTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTatatat                                                                                                                                   <  1:928745/148‑1 (MQ=255)
                     ggAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATAtattta                                                                                                                                <  1:3543099/148‑1 (MQ=255)
                      gAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTCTAtatttat                                                                                                                               >  2:1229350/1‑148 (MQ=255)
                      gAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATAtatttat                                                                                                                               <  2:3399727/148‑1 (MQ=255)
                          aaCACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTag                                                                                                                           >  2:761981/1‑148 (MQ=255)
                           acacCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTaga                                                                                                                          >  2:478336/1‑148 (MQ=255)
                            cacCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTagaa                                                                                                                         >  2:3695351/1‑148 (MQ=255)
                                 gctgcATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGtt                                                                                                                    >  1:997556/1‑148 (MQ=255)
                                 gctgcATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGtt                                                                                                                    <  1:2905642/148‑1 (MQ=255)
                                      attattTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACaaa                                                                                                               >  1:3678468/1‑148 (MQ=255)
                                      attattTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACaaa                                                                                                               <  2:2145573/148‑1 (MQ=255)
                                       ttattTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACaaaa                                                                                                              >  2:1862429/1‑148 (MQ=255)
                                       ttattTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACaaaa                                                                                                              >  1:2529692/1‑148 (MQ=255)
                                       ttatcTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACaaaa                                                                                                              >  1:3034945/1‑148 (MQ=255)
                                          tttCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCa                                                                                                           >  2:1798481/1‑148 (MQ=255)
                                             cctccGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCa                                                                                                        <  2:2485239/148‑1 (MQ=255)
                                                 cGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAatat                                                                                                    <  2:1571756/148‑1 (MQ=255)
                                                    gAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATAtctc                                                                                                 <  1:1805440/148‑1 (MQ=255)
                                                    gAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATAtctc                                                                                                 <  2:604176/148‑1 (MQ=255)
                                                       aTAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCg                                                                                              >  2:1719243/1‑148 (MQ=255)
                                                        tAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCgg                                                                                             >  1:1500643/1‑148 (MQ=255)
                                                         aGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGt                                                                                            >  1:1722652/1‑148 (MQ=255)
                                                              aaaTAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATa                                                                                       <  1:413331/148‑1 (MQ=255)
                                                                ataatTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCCTCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACa                                                                                     >  1:1779040/1‑148 (MQ=255)
                                                                ataatTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACa                                                                                     >  1:3134614/1‑148 (MQ=255)
                                                                   atTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGAt                                                                                  <  1:1914074/148‑1 (MQ=255)
                                                                     tACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATTGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATgg                                                                                >  1:2407055/1‑148 (MQ=255)
                                                                     tACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATgg                                                                                >  2:844004/1‑148 (MQ=255)
                                                                        cTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCa                                                                             <  1:1056784/148‑1 (MQ=255)
                                                                           aTGTAATCTATCGTAATACTTCGATTGGTAAAATTAATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTg                                                                          <  1:759664/148‑1 (MQ=255)
                                                                             gTAATCTATCGTAATACTTCGATTGGTAAAATTCATCTATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACATGCTATATATTTATTTAGAAGAGATACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGAc                                                                        >  1:651846/1‑148 (MQ=255)
                                                                             gTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGAc                                                                        >  2:1484235/1‑148 (MQ=255)
                                                                             gTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGAc                                                                        >  2:1169899/1‑148 (MQ=255)
                                                                              tAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACa                                                                       >  1:3735298/1‑148 (MQ=255)
                                                                               aaTCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGATACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGAAAt                                                                      >  2:2372450/1‑148 (MQ=255)
                                                                                 tCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCa                                                                    <  1:2331145/148‑1 (MQ=255)
                                                                                 tCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCa                                                                    >  2:439817/1‑148 (MQ=255)
                                                                                 tCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCa                                                                    >  2:3089408/1‑148 (MQ=255)
                                                                                       gTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGa                                                              <  1:2410356/148‑1 (MQ=255)
                                                                                         aaTACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGaat                                                            >  1:3221567/1‑148 (MQ=255)
                                                                                         aaTACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGaat                                                            >  1:2679331/1‑148 (MQ=255)
                                                                                          aTACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGaata                                                           <  2:1180731/148‑1 (MQ=255)
                                                                                          aTACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGaata                                                           <  2:2221041/148‑1 (MQ=255)
                                                                                          aTACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGaata                                                           >  2:2030985/1‑148 (MQ=255)
                                                                                             cTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATg                                                        <  2:2863913/148‑1 (MQ=255)
                                                                                              ttCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGt                                                       >  1:3446019/1‑148 (MQ=255)
                                                                                              ttCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGt                                                       <  1:799393/148‑1 (MQ=255)
                                                                                              ttCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGt                                                       >  1:601729/1‑148 (MQ=255)
                                                                                               tCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTc                                                      >  1:1715901/1‑148 (MQ=255)
                                                                                                cGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTca                                                     >  1:1082139/1‑148 (MQ=255)
                                                                                                  aTTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTcagc                                                   >  2:3304094/1‑148 (MQ=255)
                                                                                                  aTTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTcagc                                                   >  2:3537784/1‑148 (MQ=255)
                                                                                                  aTTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTcagc                                                   >  1:2235299/1‑148 (MQ=255)
                                                                                                    tGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTcagcag                                                 >  1:3518453/1‑148 (MQ=255)
                                                                                                        aaaaTTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGccc                                             >  2:3304804/1‑148 (MQ=255)
                                                                                                        aaaaTTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGccc                                             >  1:2384897/1‑148 (MQ=255)
                                                                                                                tcgatcgaCGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGacac                                     >  1:2952713/1‑148 (MQ=255)
                                                                                                                  gatcgaCGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACaa                                   <  1:1469190/148‑1 (MQ=255)
                                                                                                                    tcgaCGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATc                                 >  2:1311288/1‑148 (MQ=255)
                                                                                                                           aGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTg                          <  2:1391571/148‑1 (MQ=255)
                                                                                                                            ggAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGa                         >  1:3080383/1‑148 (MQ=255)
                                                                                                                            ggAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGa                         >  1:2693539/1‑148 (MQ=255)
                                                                                                                             gAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGAt                        >  1:836868/1‑148 (MQ=255)
                                                                                                                             gAATTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGAt                        >  1:2751560/1‑148 (MQ=255)
                                                                                                                             gAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGAt                        <  1:2423874/148‑1 (MQ=255)
                                                                                                                              aaTTTTTTCATGTTCGATATGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATa                       >  2:3157671/1‑148 (MQ=255)
                                                                                                                                 tttttCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACaa                    >  2:2616787/1‑148 (MQ=255)
                                                                                                                                 tttttCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACaa                    >  1:1992091/1‑148 (MQ=255)
                                                                                                                                    ttaaTGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGa                 <  2:3623225/145‑1 (MQ=255)
                                                                                                                                    ttCATGTTCGATATGAATTTCACATTCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGAGGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGa                 <  2:1732844/148‑1 (MQ=255)
                                                                                                                                      cATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAAt               >  2:698125/1‑148 (MQ=255)
                                                                                                                                       aTGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATc              >  1:133842/1‑148 (MQ=255)
                                                                                                                                       aTGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATc              >  2:3167136/1‑148 (MQ=255)
                                                                                                                                       aTGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATc              >  1:2093476/1‑148 (MQ=255)
                                                                                                                                       aTGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATc              >  2:3526782/1‑148 (MQ=255)
                                                                                                                                       aTGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATc              <  2:1064162/148‑1 (MQ=255)
                                                                                                                                        tGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATcc             >  2:1679548/1‑148 (MQ=255)
                                                                                                                                              atatGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACg       >  2:2237250/1‑148 (MQ=255)
                                                                                                                                              atatGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACg       >  2:719241/1‑148 (MQ=255)
                                                                                                                                               tatGTATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGa      <  1:2568695/148‑1 (MQ=255)
                                                                                                                                               tatGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGa      <  2:2958601/148‑1 (MQ=255)
                                                                                                                                                  gAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGACaa   >  1:1595698/1‑148 (MQ=255)
                                                                                                                                                  gAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGACaa   >  1:1622746/1‑148 (MQ=255)
                                                                                                                                                  gAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGACaa   >  1:572396/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AATTAAGAAACTCAGTTTCCTGGAAAAACACCTGCTGCATTATTTCCTCCGGGAAATAGCAGAAATAATTACCTTATGTAATCTATCGTAATACTTCGATTGGTAAAATTCATCGATCGACGCAGGAATTTTTTCATGTTCGATATGAATTTCACCTGCTATATATTTATTTAGAAGAGTTACAAAACCAGCAATATCTCCCGGTTGATACAGATGGCCATTGACATCAGGTTGAATAATGTCAGCAGGCCCGGAGACACAATCGGCACTGATACAAGGAATCCCCCACGACAAG  >  CP009273/3796379‑3796673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A