Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 738,124:1 +T 44.7% intergenic (‑112/‑159) dtpD ← / → ybgI dipeptide and tripeptide permease D/NIF3 family metal‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273738,1241.T44.7% 34.3 / inf 284intergenic (‑112/‑159)dtpD/ybgIdipeptide and tripeptide permease D/NIF3 family metal‑binding protein
Reads supporting (aligned to +/- strand):  ref base . (84/73);  new base T (56/71);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 1.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 292 total aligned reads displayed.

TAGTAAATAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAA  >  CP009273/737975‑738273
                                                                                                                                                      |                                                                                                                                                     
 aGTAAATAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑t                                                                                                                                                      >  1:1511913/1‑150 (MQ=255)
   tAAATAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑ttt                                                                                                                                                    <  2:3766278/150‑2 (MQ=255)
   tAAATAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATGGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTACAGTTAACACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTg                                                                                                                                                    <  2:1673917/150‑1 (MQ=255)
    aaaTAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGc                                                                                                                                                   <  1:3383810/150‑1 (MQ=255)
       tAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑tttgcat                                                                                                                                                <  2:2812491/150‑6 (MQ=255)
          cgcgcgGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAat                                                                                                                                             >  2:280520/1‑150 (MQ=255)
             gcgGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAActat                                                                                                                                           <  1:176959/150‑1 (MQ=255)
              cgGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATAc                                                                                                                                         <  1:104720/150‑1 (MQ=255)
               ggCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACa                                                                                                                                        >  1:1594299/1‑150 (MQ=255)
                 cTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACAtt                                                                                                                                      >  1:1626445/1‑150 (MQ=255)
                  tgtgATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTa                                                                                                                                     >  1:4099627/1‑150 (MQ=255)
                   gtgATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTa                                                                                                                                     <  2:2110635/150‑1 (MQ=255)
                    tgATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAg                                                                                                                                    <  1:2541022/150‑1 (MQ=255)
                       tGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATCGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGAGTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGa                                                                                                                                <  2:753902/150‑1 (MQ=255)
                       tGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGa                                                                                                                                <  2:753947/150‑1 (MQ=255)
                         cGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAg                                                                                                                              >  1:116860/1‑150 (MQ=255)
                          gtgtTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGc                                                                                                                             <  1:2589656/150‑1 (MQ=255)
                               tATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGtgat                                                                                                                        >  2:334110/1‑150 (MQ=255)
                               tATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGtgat                                                                                                                        <  1:287494/150‑1 (MQ=255)
                               tATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTAGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGtgat                                                                                                                        <  2:1179286/150‑1 (MQ=255)
                                  tCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTgatgat                                                                                                                     <  2:1549899/150‑1 (MQ=255)
                                   cATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTgatgat                                                                                                                     >  2:2197242/1‑150 (MQ=255)
                                    ataataATTCCACAATTGACGTCTACGTCACTTAATCGTTGCGCGGCGTTCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTTCATAAATATACATGAGCTGAAGCGTGATGatat                                                                                                                   <  2:2542450/150‑1 (MQ=255)
                                       ataatTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAATCGTGATGATATaa                                                                                                                 >  1:2415054/1‑150 (MQ=255)
                                       ataatTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATaaa                                                                                                                >  2:2334900/1‑150 (MQ=255)
                                        taatTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATaaa                                                                                                                >  1:3656511/1‑150 (MQ=255)
                                        taatTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAAc                                                                                                               <  1:827590/150‑1 (MQ=255)
                                         aatTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAAc                                                                                                               >  2:2360458/1‑150 (MQ=255)
                                            tCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAAtt                                                                                                           >  2:627118/1‑150 (MQ=255)
                                            tCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAAtt                                                                                                           >  2:2936839/1‑150 (MQ=255)
                                             ccACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAAtt                                                                                                           >  1:435076/1‑150 (MQ=255)
                                             ccACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAAttt                                                                                                          >  1:738281/1‑150 (MQ=255)
                                             ccACAATTGACGGCAACGTCACGCAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAAttt                                                                                                          >  2:1389916/1‑150 (MQ=255)
                                              cacaATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTg                                                                                                         >  1:2204204/1‑150 (MQ=255)
                                              cacaATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTg                                                                                                         >  1:380917/1‑150 (MQ=255)
                                                caATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCg                                                                                                       >  1:475015/1‑150 (MQ=255)
                                                 aaTTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCg                                                                                                       <  1:437100/150‑1 (MQ=255)
                                                 aaTTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGt                                                                                                      >  2:303952/1‑150 (MQ=255)
                                                   ttGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTc                                                                                                     <  1:3632866/150‑1 (MQ=255)
                                                     gACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCtt                                                                                                   >  2:3089690/1‑150 (MQ=255)
                                                       cGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCtttt                                                                                                 <  2:3855297/150‑1 (MQ=255)
                                                         gCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGc                                                                                              >  2:3696304/1‑150 (MQ=255)
                                                           aaCGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCg                                                                                             <  1:3713478/150‑1 (MQ=255)
                                                            aCGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTc                                                                                           <  2:4154792/150‑1 (MQ=255)
                                                                cACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGgt                                                                                       <  2:1595971/150‑1 (MQ=255)
                                                                 aCGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGgt                                                                                       >  1:3061041/1‑150 (MQ=255)
                                                                      aTAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGgtttgtt                                                                                  <  1:1651420/150‑1 (MQ=255)
                                                                      aTAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGgtttgtt                                                                                  <  2:1719486/150‑1 (MQ=255)
                                                                      aTAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGgtttgttt                                                                                 <  2:2738942/150‑1 (MQ=255)
                                                                       tAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGgtttgttt                                                                                 <  2:2659393/150‑1 (MQ=255)
                                                                       tAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTc                                                                                >  1:1008151/1‑150 (MQ=255)
                                                                        aGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTc                                                                                >  2:1745257/1‑150 (MQ=255)
                                                                           tGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTa                                                                             >  1:1451256/1‑150 (MQ=255)
                                                                                ggcgTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGt                                                                       <  1:2015774/150‑1 (MQ=255)
                                                                                 gcgTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGt                                                                       <  1:142313/150‑1 (MQ=255)
                                                                                     gCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCaaa                                                                   >  1:443252/1‑150 (MQ=255)
                                                                                     gCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCaaa                                                                   <  1:3963615/150‑1 (MQ=255)
                                                                                      cTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCaaaa                                                                  <  1:1903080/150‑1 (MQ=255)
                                                                                      cTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAg                                                                 >  2:3908075/1‑150 (MQ=255)
                                                                                        tgtgTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGAt                                                               >  2:2770360/1‑150 (MQ=255)
                                                                                         gtgtTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGAtt                                                              >  2:3409409/1‑150 (MQ=255)
                                                                                           gtTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTgg                                                            >  1:2757919/1‑150 (MQ=255)
                                                                                             ttCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCt                                                          <  1:988064/150‑1 (MQ=255)
                                                                                                cTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTAt                                                        >  1:2319695/1‑150 (MQ=255)
                                                                                                 ttAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATcg                                                      <  2:1975601/150‑1 (MQ=255)
                                                                                                  tAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATcga                                                     >  2:1930262/1‑150 (MQ=255)
                                                                                                   aaaGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATcgac                                                    >  2:2709296/1‑150 (MQ=255)
                                                                                                      gTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATcgacga                                                  <  2:3511379/150‑1 (MQ=255)
                                                                                                          aaaCTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTg                                              <  2:2388900/150‑1 (MQ=255)
                                                                                                           aaCTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTgg                                             >  2:1187651/1‑150 (MQ=255)
                                                                                                           aaCTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTgg                                             >  2:3161167/1‑150 (MQ=255)
                                                                                                              tttGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAg                                         <  1:4087609/150‑1 (MQ=255)
                                                                                                              tttGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTGTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAg                                         >  1:412801/1‑150 (MQ=255)
                                                                                                                   tACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAAc                                    >  1:1845883/1‑150 (MQ=255)
                                                                                                                    aCAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAAc                                    >  2:1363725/1‑150 (MQ=255)
                                                                                                                    aCAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAAc                                    >  2:2877226/1‑150 (MQ=255)
                                                                                                                     cAGATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACg                                   <  2:3058218/150‑1 (MQ=255)
                                                                                                                      aGATCTTATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCt                                 <  2:175704/150‑1 (MQ=255)
                                                                                                                       gATCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCt                                 <  2:1112815/150‑1 (MQ=255)
                                                                                                                        aTCTGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTa                                <  1:1362203/150‑1 (MQ=255)
                                                                                                                           tGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATACACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATTTCAAAAGAGTGTCTATCGACGAACTGGCGAGGTAACGCTATGt                             <  1:306172/150‑1 (MQ=255)
                                                                                                                           tGATTATTTATGCAATATGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGt                             >  2:2075293/1‑150 (MQ=255)
                                                                                                                              ttatttatGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAAc                         >  1:3750866/1‑150 (MQ=255)
                                                                                                                                atttatGCAATTTGCTGTCTGATTTGCATAAATATACATGAGCTGTAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACg                        <  2:4081371/150‑1 (MQ=255)
                                                                                                                                  ttatGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGgtg                     <  2:872805/150‑1 (MQ=255)
                                                                                                                                         anatGCTGTATTA‑TTGAATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGTGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCTAGTTAACGCTATGTTAACGGTGTAGatat              >  2:850529/1‑150 (MQ=255)
                                                                                                                                          tatGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTAt              <  1:252724/150‑1 (MQ=255)
                                                                                                                                           atGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATc             >  1:2647568/1‑150 (MQ=255)
                                                                                                                                           atGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATc             <  2:1798047/150‑1 (MQ=255)
                                                                                                                                            tGCTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCa            <  2:792135/150‑1 (MQ=255)
                                                                                                                                              cTGTCTGATTTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGa          >  2:3828952/1‑150 (MQ=255)
                                                                                                                                               tGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAAt        >  1:3457150/1‑150 (MQ=255)
                                                                                                                                               tGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAAt        <  1:1209281/150‑1 (MQ=255)
                                                                                                                                                gTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATa       >  1:3774780/1‑150 (MQ=255)
                                                                                                                                                gTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATa       <  2:2131284/150‑1 (MQ=255)
                                                                                                                                                 tCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATAc      >  1:3940027/1‑150 (MQ=255)
                                                                                                                                                  cTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACg     >  1:603913/1‑150 (MQ=255)
                                                                                                                                                  cTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACg     <  2:826289/150‑1 (MQ=255)
                                                                                                                                                   tGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGAGTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTCTCAGAATACgg    >  1:295519/1‑150 (MQ=255)
                                                                                                                                                     a‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGaa  >  2:2580853/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
TAGTAAATAGCGCGCGGCTGTGATGCGTGTTTATTCATAATAATTCCACAATTGACGGCAACGTCACGTAATAGTTGCGCGGCGTGCTTGTGTTTCCTTAAAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGA‑TTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAA  >  CP009273/737975‑738273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A