Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
146 |
27.9 |
2327082 |
89.7% |
2087392 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
787,769 |
+T |
intergenic (‑549/+743) |
h16_A0728 ← / ← h16_A0729 |
response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 787,768 | 1 | . | T | 100.0%
| 169.4
/ NA
| 44 | intergenic (‑548/+744) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (24/20); total (24/20) |
CCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTC > AM260479/787652‑787883
|
ccAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 1:599364/134‑1 (MQ=255)
gACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTg < 2:1095357/134‑1 (MQ=255)
ttCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCgg > 2:1024769/1‑134 (MQ=255)
ttCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCgg > 1:70273/1‑134 (MQ=255)
cccACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcgc > 1:144569/1‑134 (MQ=255)
gcgcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGc < 2:328559/134‑1 (MQ=255)
cgcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcg < 2:113419/134‑1 (MQ=255)
gcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcga > 1:1146252/1‑134 (MQ=255)
gcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcga > 1:651579/1‑134 (MQ=255)
aGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTc < 2:732413/108‑1 (MQ=255)
aGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTc > 1:732413/1‑108 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 1:930842/83‑1 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 2:930842/1‑83 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 2:54836/1‑83 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 1:54836/83‑1 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg > 2:1017742/1‑114 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg < 1:515319/114‑1 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg > 2:515319/1‑114 (MQ=255)
tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg < 1:1017742/114‑1 (MQ=255)
aaTCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGc < 1:202051/134‑1 (MQ=255)
ccGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGc > 1:1054540/1‑130 (MQ=255)
cGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc < 2:1054540/130‑1 (MQ=255)
tGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc > 2:1140388/1‑134 (MQ=255)
tGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc > 1:1025536/1‑134 (MQ=255)
gtcgtcCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGtt < 1:361003/85‑1 (MQ=255)
gtcgtcCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGtt > 2:361003/1‑85 (MQ=255)
gtcgtcCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGa > 1:72873/1‑134 (MQ=255)
ccTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 1:657080/1‑53 (MQ=255)
ccTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 2:657080/53‑1 (MQ=255)
gAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc > 1:222347/1‑106 (MQ=255)
gAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc < 2:222347/106‑1 (MQ=255)
tGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAAc > 1:825104/1‑96 (MQ=255)
tGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAAc < 2:825104/96‑1 (MQ=255)
ttCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 1:1123234/1‑40 (MQ=255)
ttCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 2:1123234/40‑1 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTATTCCTTTGATAACAAAaggaaaaggaaa > 1:968732/1‑134 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:435413/1‑134 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:766390/1‑134 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 2:877942/1‑134 (MQ=255)
cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACg > 2:156408/1‑42 (MQ=255)
cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACg < 1:156408/42‑1 (MQ=255)
cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAaaggaaaaggaa < 2:70273/132‑1 (MQ=255)
cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAAtttt < 2:1146252/134‑2 (MQ=255)
cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAAtttt < 2:1019982/134‑2 (MQ=255)
|
CCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTC > AM260479/787652‑787883
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAATCTTGTCGACGACCCCTGCACCTGGCCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCA > AM260479/787624‑787912
|
ttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑Ttgc < GWNJ‑0478:712:GW2002102894th:2:1115:4339:38515/77‑4 (MQ=60)
aattattttctttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGA < GWNJ‑0478:712:GW2002102894th:2:2212:7267:90720/61‑1 (MQ=60)
agtgtctcgtgggctcggagatgtgtataagagacagCGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTC < GWNJ‑0478:712:GW2002102894th:2:1102:5810:43350/113‑1 (MQ=60)
agtgtctcgtgggctcggagatgtgtataagagacagCGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTC < GWNJ‑0478:712:GW2002102894th:2:2204:4943:80376/113‑1 (MQ=60)
GCCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTC < GWNJ‑0478:712:GW2002102894th:2:2103:19053:6153/150‑1 (MQ=60)
GCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGG > GWNJ‑0478:712:GW2002102894th:2:1104:16552:37872/1‑150 (MQ=60)
tttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGG < GWNJ‑0478:712:GW2002102894th:2:1111:3117:27840/72‑1 (MQ=60)
GTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCG > GWNJ‑0478:712:GW2002102894th:2:1109:10687:64589/1‑150 (MQ=60)
gtctcgtgggctcggagatgtgtataagagacagGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGT < GWNJ‑0478:712:GW2002102894th:2:1204:16298:56286/115‑1 (MQ=60)
agacagCGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGA < GWNJ‑0478:712:GW2002102894th:2:1212:13718:77599/144‑1 (MQ=60)
agacagCGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGA < GWNJ‑0478:712:GW2002102894th:2:2208:9629:76160/144‑1 (MQ=60)
GCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGAC > GWNJ‑0478:712:GW2002102894th:2:2216:5382:19524/1‑150 (MQ=60)
GCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGAC > GWNJ‑0478:712:GW2002102894th:2:2104:7552:31834/1‑150 (MQ=60)
CACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATctgtctcttat > GWNJ‑0478:712:GW2002102894th:2:2109:11606:98954/1‑138 (MQ=60)
CGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑Ttgcctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgctt > GWNJ‑0478:712:GW2002102894th:2:2210:10852:66336/1‑82 (MQ=60)
GCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCC > GWNJ‑0478:712:GW2002102894th:2:2210:20725:70192/1‑146 (MQ=60)
GTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCT > GWNJ‑0478:712:GW2002102894th:2:2211:10468:19207/1‑150 (MQ=60)
GAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATC < GWNJ‑0478:712:GW2002102894th:2:1113:19943:67791/150‑1 (MQ=60)
GCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGAT > GWNJ‑0478:712:GW2002102894th:2:1104:10586:53130/1‑150 (MQ=60)
GGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttg > GWNJ‑0478:712:GW2002102894th:2:2104:13654:65814/1‑84 (MQ=60)
ATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCctgtctcttatac > GWNJ‑0478:712:GW2002102894th:2:1112:3783:72067/1‑136 (MQ=60)
GGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTctgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:2115:7714:77635/1‑126 (MQ=60)
GTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2215:16932:13183/1‑71 (MQ=60)
TCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTATTCCTTTGATAACAAAAGGAAAAGGAAA‑T > GWNJ‑0478:712:GW2002102894th:2:2209:11574:97087/1‑150 (MQ=60)
TCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑T > GWNJ‑0478:712:GW2002102894th:2:2110:16838:78548/1‑150 (MQ=60)
TCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑T > GWNJ‑0478:712:GW2002102894th:2:1209:9172:74616/1‑150 (MQ=60)
GTGT‑‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCA > GWNJ‑0478:712:GW2002102894th:2:2216:7419:91312/1‑149 (MQ=60)
|
TAATCTTGTCGACGACCCCTGCACCTGGCCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCA > AM260479/787624‑787912
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
