mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 36 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 4,741,228 | 1 | . | C | 70.6% | 38.7 / 37.3 | 34 | intergenic (+465/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,230 | 0 | A | G | 70.6% | 3.3 / 17.0 | 34 | intergenic (+467/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,238 | 0 | C | G | 70.6% | 1.8 / 27.8 | 34 | intergenic (+475/+278) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,240 | 0 | A | C | 70.6% | 15.7 / 15.2 | 34 | intergenic (+477/+276) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,245 | 0 | A | . | 70.6% | 46.9 / 45.6 | 34 | intergenic (+482/+271) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 1,499,498 | 0 | T | G | 69.8% | 113.9 / 169.7 | 172 | intergenic (+75/‑89) | trpS/zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| * | AE015451 | 1,499,497 | 1 | . | C | 69.2% | 117.0 / 208.6 | 172 | intergenic (+74/‑90) | trpS/zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| * | AE015451 | 4,808,180 | 0 | A | . | 65.4% | 12.0 / 65.5 | 34 | intergenic (‑289/‑266) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,179 | 0 | G | . | 56.7% | 5.2 / 64.3 | 30 | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,176 | 0 | C | . | 50.0% | 6.1 / 54.2 | 26 | intergenic (‑285/‑270) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,177 | 0 | G | . | 50.0% | ‑5.3 / 52.3 | 26 | intergenic (‑286/‑269) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,178 | 0 | C | . | 50.0% | 12.6 / 54.2 | 26 | intergenic (‑287/‑268) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 699,722 | 0 | A | G | 48.0% | 312.5 / 43.2 | 254 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | AE015451 | 1,327,121 | 0 | C | T | 47.2% | 195.2 / inf | 305 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | AE015451 | 4,348,705 | 0 | A | G | 45.4% | 341.6 / 159.6 | 335 | intergenic (‑70/+404) | PP_3820/galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | AE015451 | 4,808,171 | 0 | C | . | 41.9% | 8.3 / 52.9 | 31 | intergenic (‑280/‑275) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,172 | 0 | C | . | 41.9% | 13.0 / 52.9 | 31 | intergenic (‑281/‑274) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,173 | 0 | G | . | 41.9% | ‑1.0 / 50.9 | 31 | intergenic (‑282/‑273) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,174 | 0 | C | . | 41.9% | 9.4 / 52.9 | 31 | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,175 | 0 | C | . | 41.9% | 7.3 / 52.9 | 31 | intergenic (‑284/‑271) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4808174 | 24 (0.110) | 53 (0.270) | 44/226 | 7.8 | 72.9% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808189 = | 17 (0.090) | intergenic (‑298/‑257) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 1 = | 0 (0.000) | 58 (0.270) | 35/242 | 10.6 | 100% | intergenic (–/+146) | –/parB | –/probable chromosome‑partitioning protein |
| ? | AE015451 | = 6181873 | 0 (0.000) | intergenic (‑3/–) | atpI/– | ATP synthase protein I/– | |||||
| * | ? | AE015451 | 3049681 = | 5 (0.020) | 55 (0.260) | 34/242 | 10.8 | 37.3% | coding (841/1188 nt) | PP_2662 | conserved exported protein of unknown function |
| ? | AE015451 | 3366553 = | 180 (0.840) | intergenic (+219/‑142) | PP_2962/PP_2964 | Alcohol dehydrogenase, zinc‑containing/putative transposase | |||||
| * | ? | AE015451 | 4808174 = | 37 (0.170) | 27 (0.180) | 18/172 | 12.0 | 30.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 100 (0.660) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4808179 | 26 (0.120) | 33 (0.160) | 25/240 | 13.3 | 54.6% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808194 = | 29 (0.140) | intergenic (‑303/‑252) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | = 4808174 | 31 (0.140) | 7 (0.050) +48 bp |
5/146 | 17.2 | 17.5% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808259 = | 79 (0.370) | intergenic (‑368/‑187) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | = 4808166 | 33 (0.170) | 16 (0.080) +AGCGCCG |
11/212 | 17.5 | 32.9% | intergenic (‑275/‑280) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 4808179 | 34 (0.160) | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | = 4808174 | 37 (0.170) | 12 (0.060) | 11/214 | 17.6 | 9.3% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5737599 = | 200 (1.060) | intergenic (‑154/+48) | hutU/PP_5034 | Urocanate hydratase/Uncharacterized 21.2 kDa protein in hutC 3'region | |||||
| * | ? | AE015451 | 1683236 = | 206 (0.960) | 18 (0.100) | 9/208 | 18.4 | 15.3% | intergenic (+45/‑186) | recJ/PP_1478 | ssDNA‑specific exonuclease RecJ/putative Xenobiotic reductase |
| ? | AE015451 | = 4808162 | 22 (0.120) | intergenic (‑271/‑284) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | = 1184603 | 263 (1.230) | 15 (0.080) | 6/202 | 20.0 | 11.1% | intergenic (‑219/‑193) | mltF/purL | membrane‑bound lytic murein transglycosylase F/Phosphoribosylformylglycinamidine synthase |
| ? | AE015451 | = 4808159 | 22 (0.120) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||