mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 341,944 | 0 | T | C | 57.4% | 26.3 / 91.2 | 68 | G35G (GGA→GGG) | yahN | LysE family transporter |
| * | NZ_CP009273 | 361,532 | 0 | A | C | 51.0% | ‑4.3 / 93.9 | 51 | L71R (CTG→CGG) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NZ_CP009273 | 1,398,051 | 0 | G | T | 46.2% | ‑0.3 / 14.1 | 13 | Q258K (CAA→AAA) | abgA | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA |
| * | NZ_CP009273 | 276,021 | 0 | A | G | 40.7% | 31.4 / 64.0 | 54 | pseudogene (53/249 nt) | BW25113_RS01360 | transposase |
| * | NZ_CP009273 | 277,985 | 0 | T | G | 40.0% | 56.8 / 109.9 | 75 | intergenic (‑291/‑4) | yagA/yagE | IS481‑like element ISEc19 family transposase/2‑keto‑3‑deoxygluconate aldolase |
| * | NZ_CP009273 | 290,020 | 0 | T | C | 39.7% | 57.9 / 90.6 | 73 | E164G (GAA→GGA) | BW25113_RS01425 | hypothetical protein |
| * | NZ_CP009273 | 334,265 | 0 | A | G | 39.6% | 40.5 / 60.0 | 53 | H77R (CAT→CGT) | yahG | DUF1116 domain‑containing protein |
| * | NZ_CP009273 | 295,216 | 0 | G | C | 37.8% | 48.2 / 66.5 | 45 | A477G (GCC→GGC) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | NZ_CP009273 | 322,719 | 0 | T | C | 35.8% | 118.2 / 115.7 | 109 | G80G (GGA→GGG) | betA | choline dehydrogenase |
| * | NZ_CP009273 | 2,982,238 | 0 | A | C | 33.3% | 57.5 / 10.3 | 30 | P126P (CCA→CCC) | yqeI | transcriptional regulator |
| * | NZ_CP009273 | 277,390 | 0 | T | C | 30.7% | 88.2 / 62.3 | 75 | D102G (GAC→GGC) | yagA | IS481‑like element ISEc19 family transposase |
| * | NZ_CP009273 | 2,203,281 | 0 | G | T | 29.4% | 30.1 / 10.8 | 17 | pseudogene (703/2001 nt) | yehQ | C69 family dipeptidase |
| * | NZ_CP009273 | 350,999 | 0 | G | A | 27.9% | 101.5 / 44.7 | 61 | A123T (GCA→ACA) | codB | cytosine permease |
| * | NZ_CP009273 | 276,387 | 0 | T | C | 25.3% | 174.1 / 62.5 | 91 | G20G (GGA→GGG) | yagB | type IV toxin‑antitoxin system antitoxin YagB |
| * | NZ_CP009273 | 351,822 | 0 | T | C | 21.0% | 139.6 / 33.4 | 62 | I397T (ATC→ACC) | codB | cytosine permease |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3920778 = | 31 (1.000) | 6 (0.220) | 5/148 | 2.2 | 19.5% | coding (264/993 nt) | asnA | aspartate‑‑ammonia ligase |
| ? | NZ_CP009273 | 3920817 = | 23 (0.860) | coding (303/993 nt) | asnA | aspartate‑‑ammonia ligase | |||||
| * | ? | NZ_CP009273 | = 2707188 | 28 (0.900) | 4 (0.150) | 4/150 | 2.5 | 13.5% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NZ_CP009273 | = 2707267 | 27 (1.000) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NZ_CP009273 | = 442683 | 22 (0.710) | 4 (0.150) | 4/150 | 2.5 | 13.5% | coding (479/891 nt) | cyoE | heme o synthase |
| ? | NZ_CP009273 | = 442722 | 32 (1.180) | coding (440/891 nt) | cyoE | heme o synthase | |||||
| * | ? | NZ_CP009273 | = 866518 | 37 (1.190) | 4 (0.140) | 4/158 | 2.7 | 9.9% | coding (96/921 nt) | gsiC | glutathione ABC transporter permease GsiC |
| ? | NZ_CP009273 | = 866536 | 39 (1.370) | coding (114/921 nt) | gsiC | glutathione ABC transporter permease GsiC | |||||
| * | ? | NZ_CP009273 | 2150375 = | 23 (0.740) | 3 (0.110) | 3/154 | 3.0 | 11.9% | coding (1632/3123 nt) | mdtB | multidrug efflux RND transporter permease subunit MdtB |
| ? | NZ_CP009273 | 2150400 = | 24 (0.860) | coding (1657/3123 nt) | mdtB | multidrug efflux RND transporter permease subunit MdtB | |||||
| * | ? | NZ_CP009273 | = 508794 | 30 (0.970) | 3 (0.110) | 3/152 | 3.0 | 9.0% | coding (763/1293 nt) | ybaT | APC family permease |
| ? | NZ_CP009273 | = 508809 | 34 (1.240) | coding (778/1293 nt) | ybaT | APC family permease | |||||
| * | ? | NZ_CP009273 | 248296 = | 16 (0.520) | 3 (0.110) | 3/156 | 3.0 | 13.8% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | NZ_CP009273 | 248360 = | 23 (0.820) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | NZ_CP009273 | = 725114 | 22 (0.710) | 3 (0.110) | 3/158 | 3.1 | 10.7% | coding (76/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NZ_CP009273 | = 725154 | 30 (1.050) | coding (116/4194 nt) | rhsC | rhs element protein RhsC | |||||