mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 26 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,170,061 | 0 | T | C | 61.5% | 2.7 / 10.3 | 13 | G187G (GGA→GGG) | ycfT | acyltransferase family protein |
| * | NZ_CP009273 | 4,017,095 | 0 | T | G | 60.0% | 9.4 / 12.4 | 15 | V61G (GTA→GGA) | tatD | 3'‑5' ssDNA/RNA exonuclease TatD |
| * | NZ_CP009273 | 2,794,496 | 0 | T | G | 58.8% | 13.1 / 16.0 | 17 | V58G (GTG→GGG) | nrdI | class Ib ribonucleoside‑diphosphate reductase assembly flavoprotein NrdI |
| * | NZ_CP009273 | 4,290,979 | 0 | T | G | 58.8% | 8.9 / 14.1 | 17 | T639T (ACA→ACC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 899,438 | 0 | A | C | 58.3% | 4.8 / 11.6 | 12 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 1,140,658 | 0 | T | G | 58.3% | 5.5 / 10.4 | 12 | V88G (GTG→GGG) | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC |
| * | NZ_CP009273 | 2,458,992 | 0 | C | G | 58.3% | 1.4 / 10.2 | 12 | G71G (GGC→GGG) | yfdC | formate/nitrite transporter family protein |
| * | NZ_CP009273 | 4,218,241 | 0 | A | C | 55.6% | 11.8 / 16.7 | 18 | T195P (ACC→CCC) | yjbB | Na/Pi cotransporter family protein |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 54.5% | 2.8 / 11.9 | 12 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 54.5% | 4.4 / 13.6 | 11 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 1,819,313 | 0 | G | A | 54.2% | 3.9 / 25.1 | 24 | intergenic (‑119/+84) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 53.8% | 6.2 / 13.0 | 13 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 53.8% | ‑6.0 / 10.7 | 13 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 53.8% | 1.0 / 13.4 | 13 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 53.8% | 12.0 / 15.1 | 13 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 3,214,112 | 0 | T | A | 53.8% | 10.1 / 17.4 | 13 | N420K (AAT→AAA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 53.3% | 8.7 / 16.9 | 15 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 4,245,989 | 0 | C | T | 53.3% | 0.7 / 13.0 | 15 | E136K (GAA→AAA) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsB |
| * | NZ_CP009273 | 700,026 | 0 | T | G | 52.9% | 9.7 / 17.0 | 17 | G209G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 1,155,293 | 0 | A | G | 52.9% | 10.5 / 20.5 | 17 | I572T (ATC→ACC) | fhuE | ferric‑rhodotorulic acid/ferric‑coprogen receptor FhuE |