mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 371,031 | 0 | T | G | 61.5% | 2.7 / 10.3 | 13 | G39G (GGT→GGG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 61.1% | 0.4 / 13.5 | 18 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 58.3% | ‑4.0 / 11.9 | 12 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 54.5% | 5.6 / 10.0 | 11 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 726,192 | 0 | A | C | 54.5% | 8.0 / 11.4 | 11 | D385A (GAC→GCC) | rhsC | rhs element protein RhsC |
| * | NZ_CP009273 | 2,216,154 | 0 | T | G | 54.5% | 6.4 / 10.8 | 11 | V164G (GTG→GGG) | dld | D‑lactate dehydrogenase |
| * | NZ_CP009273 | 4,291,017 | 0 | C | G | 54.5% | 7.5 / 12.6 | 11 | A627P (GCA→CCA) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 4,544,926 | 0 | T | A | 54.5% | 1.2 / 12.9 | 11 | N178K (AAT→AAA) | uxuR | Uxu operon transcriptional regulator |
| * | NZ_CP009273 | 858,015 | 0 | G | T | 53.8% | 5.6 / 16.8 | 13 | H16Q (CAC→CAA) | ybiW | glycyl radical protein |
| * | NZ_CP009273 | 1,379,045 | 0 | T | G | 53.3% | 4.0 / 11.6 | 15 | G224G (GGT→GGG) | ycjX | YcjX family protein |
| * | NZ_CP009273 | 3,659,067 | 0 | A | C | 52.9% | 9.2 / 14.5 | 17 | V35G (GTT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,775,223 | 0 | T | G | 52.9% | 11.4 / 14.4 | 17 | T234P (ACC→CCC) | cysE | serine O‑acetyltransferase |
| * | NZ_CP009273 | 2,601,603 | 0 | T | G | 52.6% | 5.8 / 13.4 | 19 | V443G (GTG→GGG) | hyfF | hydrogenase 4 subunit F |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 50.0% | 12.1 / 12.7 | 20 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,999,371 | 0 | C | T | 45.0% | 7.4 / 10.1 | 20 | intergenic (‑226/‑253) | ygeV/ygeW | sigma‑54‑dependent Fis family transcriptional regulator/knotted carbamoyltransferase YgeW |
| * | NZ_CP009273 | 341,015 | 0 | G | A | 36.0% | 23.5 / 10.2 | 25 | intergenic (+313/‑100) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |