breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 3,650,516 T→C G54G (GGT→GGC)  hdeD → acid‑resistance protein HdeD
RA 4,267,804 Δ1 bp coding (408/465 nt) soxR → redox‑sensitive transcriptional activator SoxR

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 181579 181594 16 2 [1] [1] 2 yaeI/dapD phosphodiesterase YaeI/2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
* * ÷ NZ_CP009273 203088 203113 26 2 [1] [1] 3 dnaE DNA polymerase III subunit alpha
* * ÷ NZ_CP009273 233649 233750 102 2 [1] [1] 3 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 356981 357574 594 2 [0] [1] 3 [lacA] [lacA]
* * ÷ NZ_CP009273 410009 410106 98 2 [1] [1] 2 sbcC exonuclease subunit SbcC
* * ÷ NZ_CP009273 418926 419026 101 2 [1] [0] 3 malZ maltodextrin glucosidase
* * ÷ NZ_CP009273 428486 428556 71 2 [1] [0] 2 nrdR transcriptional regulator NrdR
* * ÷ NZ_CP009273 433966 433989 24 2 [1] [1] 2 dxs 1‑deoxy‑D‑xylulose‑5‑phosphate synthase
* * ÷ NZ_CP009273 438758 438764 7 2 [0] [1] 2 yajL protein deglycase YajL
* * ÷ NZ_CP009273 450896 450918 23 3 [1] [1] 3 tig trigger factor
* * ÷ NZ_CP009273 467497 467519 23 2 [1] [1] 3 mdlB SmdB family multidrug efflux ABC transporter permease/ATP‑binding protein
* * ÷ NZ_CP009273 471399 471407 9 2 [0] [1] 2 ybaY YbaY family lipoprotein
* * ÷ NZ_CP009273 472445 472482 38 3 [0] [1] 2 [ybaA] [ybaA]
* * ÷ NZ_CP009273 496978 497004 27 2 [1] [1] 2 gsk/ybaL inosine/guanosine kinase/Kef family K(+) transporter
* * ÷ NZ_CP009273 500048 500079 32 2 [1] [1] 2 fsr fosmidomycin MFS transporter
* * ÷ NZ_CP009273 513469 513498 30 2 [1] [0] 2 cnoX chaperedoxin
* * ÷ NZ_CP009273 542914 542953 40 3 [1] [1] 2 fdrA acyl‑CoA synthetase FdrA
* * ÷ NZ_CP009273 548887 548931 45 2 [1] [1] 2 lpxH UDP‑2,3‑diacylglucosamine diphosphatase
* * ÷ NZ_CP009273 550598 550626 29 2 [1] [1] 2 cysS cysteine‑‑tRNA ligase
* * ÷ NZ_CP009273 578955 579033 79 2 [1] [0] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 596367 596421 55 2 [1] [1] 4 cusA Cu(+)/Ag(+) efflux RND transporter permease subunit CusA
* * ÷ NZ_CP009273 608722 608764 43 2 [1] [1] 2 fes enterochelin esterase
* * ÷ NZ_CP009273 611177 611185 9 3 [1] [0] 2 entF enterobactin non‑ribosomal peptide synthetase EntF
* * ÷ NZ_CP009273 615167 615200 34 3 [1] [1] 2 fepC iron‑enterobactin ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 642623 642668 46 2 [0] [1] 2 citG triphosphoribosyl‑dephospho‑CoA synthase CitG
* * ÷ NZ_CP009273 642788 642843 56 2 [1] [1] 2 citG triphosphoribosyl‑dephospho‑CoA synthase CitG
* * ÷ NZ_CP009273 643119 643164 46 2 [1] [0] 3 citX citrate lyase holo‑[acyl‑carrier protein] synthase
* * ÷ NZ_CP009273 647495 647623 129 2 [0] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 648338 648388 51 2 [1] [1] 2 dpiB sensor histidine kinase DpiB
* * ÷ NZ_CP009273 670809 670829 21 5 [1] [1] 3 ybeL zinc ribbon‑containing protein
* * ÷ NZ_CP009273 696245 696271 27 2 [1] [1] 2 nagC DNA‑binding transcriptional regulator NagC
* * ÷ NZ_CP009273 699714 699739 26 2 [1] [0] 2 nagE PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 709617 709640 24 2 [1] [1] 2 pgm phosphoglucomutase (alpha‑D‑glucose‑1,6‑bisphosphate‑dependent)
* * ÷ NZ_CP009273 716441 716575 135 2 [1] [1] 2 [kdpE] [kdpE]
* * ÷ NZ_CP009273 752996 753038 43 3 [1] [1] 2 sdhA succinate dehydrogenase flavoprotein subunit
* * ÷ NZ_CP009273 757484 757510 27 2 [1] [1] 2 odhB 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase
* * ÷ NZ_CP009273 766315 766364 50 2 [1] [1] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 778897 778924 28 2 [1] [1] 2 pnuC nicotinamide riboside transporter PnuC
* * ÷ NZ_CP009273 785003 785069 67 2 [1] [1] 2 galK galactokinase
* * ÷ NZ_CP009273 786103 786165 63 2 [1] [1] 3 galT galactose‑1‑phosphate uridylyltransferase
* * ÷ NZ_CP009273 794381 794406 26 3 [1] [1] 2 pgl 6‑phosphogluconolactonase
* * ÷ NZ_CP009273 833782 833824 43 2 [1] [1] 2 ybiI C4‑type zinc finger protein YbiI
* * ÷ NZ_CP009273 838676 838727 52 2 [1] [1] 2 [rlmF]–[ybiO] [rlmF],[ybiO]
* * ÷ NZ_CP009273 862391 862439 49 2 [1] [1] 2 iaaA beta‑aspartyl‑peptidase
* * ÷ NZ_CP009273 864109 864129 21 2 [1] [0] 2 gsiA glutathione ABC transporter ATP‑binding protein GsiA
* * ÷ NZ_CP009273 874071 874093 23 3 [1] [1] 2 [bssR] [bssR]
* * ÷ NZ_CP009273 892845 892855 11 2 [1] [0] 2 potI putrescine ABC transporter permease PotI
* * ÷ NZ_CP009273 902996 903114 119 2 [0] [1] 4 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 912330 912352 23 2 [1] [1] 2 ybjD ATP‑dependent endonuclease
* * ÷ NZ_CP009273 916474 916527 54 2 [1] [1] 2 macB macrolide ABC transporter ATP‑binding protein/permease MacB
* * ÷ NZ_CP009273 925135 925145 11 2 [0] [1] 5 cydD cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD
* * ÷ NZ_CP009273 929854 929912 59 2 [1] [1] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 931071 931129 59 2 [1] [1] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 982708 982726 19 2 [1] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 983500 983523 24 2 [1] [1] 2 asnS asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 988519 988568 50 2 [1] [1] 2 pepN aminopeptidase N
* * ÷ NZ_CP009273 989994 990023 30 2 [1] [1] 2 ssuC aliphatic sulfonate ABC transporter permease SsuC
* * ÷ NZ_CP009273 993134 993171 38 2 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 999546 999590 45 3 [0] [1] 2 ycbF fimbrial chaperone
* * ÷ NZ_CP009273 1005665 1005713 49 2 [1] [1] 2 uup ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1008878 1008917 40 2 [1] [1] 2 pqiB intermembrane transport protein PqiB
* * ÷ NZ_CP009273 1011517 1011537 21 3 [1] [1] 3 fabA bifunctional 3‑hydroxydecanoyl‑ACP dehydratase/trans‑2‑decenoyl‑ACP isomerase
* * ÷ NZ_CP009273 1015814 1015862 49 2 [1] [1] 4 ompA/sulA porin OmpA/cell division inhibitor SulA
* * ÷ NZ_CP009273 1021211 1021255 45 2 [1] [1] 2 helD DNA helicase IV
* * ÷ NZ_CP009273 1023765 1023794 30 2 [1] [1] 2 yccU CoA‑binding protein
* * ÷ NZ_CP009273 1024803 1024820 18 2 [1] [1] 2 rlmI 23S rRNA (cytosine(1962)‑C(5))‑methyltransferase RlmI
* * ÷ NZ_CP009273 1027830 1027845 16 2 [1] [0] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1028515 1028586 72 2 [1] [1] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1029306 1029333 28 2 [1] [0] 2 hyaB Ni/Fe‑hydrogenase large subunit
* * ÷ NZ_CP009273 1034307 1034362 56 6 [1] [0] 3 appC cytochrome bd‑II oxidase subunit 1
* * ÷ NZ_CP009273 1049736 1049756 21 2 [1] [1] 2 torS TMAO reductase system sensor histidine kinase/response regulator TorS
* * ÷ NZ_CP009273 1058691 1058710 20 2 [0] [1] 2 cbpA curved DNA‑binding protein
* * ÷ NZ_CP009273 1062288 1062311 24 2 [1] [1] 2 agp/yccJ bifunctional glucose‑1‑phosphatase/inositol phosphatase/YccJ family protein
* * ÷ NZ_CP009273 1064316 1064343 28 2 [1] [1] 2 rutG pyrimidine utilization transport protein G
* * ÷ NZ_CP009273 1072127 1072163 37 2 [1] [0] 3 putA trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1076105 1076130 26 2 [0] [1] 2 putP sodium/proline symporter PutP
* * ÷ NZ_CP009273 1088105 1088142 38 3 [1] [1] 2 pgaA/dgcT poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1098778 1098824 47 2 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1113656 1113691 36 2 [0] [1] 2 yceI YceI family protein
* * ÷ NZ_CP009273 1117172 1117200 29 2 [1] [1] 3 pyrC dihydroorotase
* * ÷ NZ_CP009273 1117530 1117531 2 2 [0] [0] 2 pyrC dihydroorotase
* * ÷ NZ_CP009273 1119997 1120019 23 2 [1] [1] 2 mdtH multidrug efflux MFS transporter MdtH
* * ÷ NZ_CP009273 1122280 1122336 57 2 [1] [1] 2 yceM Gfo/Idh/MocA family oxidoreductase
* * ÷ NZ_CP009273 1126535 1126586 52 2 [0] [0] 2 flgB flagellar basal body rod protein FlgB
* * ÷ NZ_CP009273 1133625 1133649 25 3 [1] [1] 2 flgJ flagellar assembly peptidoglycan hydrolase FlgJ
* * ÷ NZ_CP009273 1137034 1137088 55 2 [1] [0] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1137669 1137695 27 3 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1137981 1138069 89 2 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1140847 1140881 35 2 [1] [1] 2 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
* * ÷ NZ_CP009273 1144419 1144435 17 2 [1] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1150383 1150402 20 2 [1] [1] 2 yceG cell division protein YceG
* * ÷ NZ_CP009273 1153448 1153499 52 3 [1] [1] 2 ptsG PTS glucose transporter subunit IIBC
* * ÷ NZ_CP009273 1166867 1166929 63 3 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1172348 1172403 56 2 [1] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1178498 1178510 13 2 [1] [1] 2 potC spermidine/putrescine ABC transporter permease PotC
* * ÷ NZ_CP009273 1178772 1178788 17 2 [1] [1] 2 potC spermidine/putrescine ABC transporter permease PotC
* * ÷ NZ_CP009273 1180866 1180899 34 3 [1] [1] 2 potA spermidine/putrescine ABC transporter ATP‑binding protein PotA
* * ÷ NZ_CP009273 1186270 1186285 16 2 [1] [0] 2 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1188270 1188279 10 2 [0] [1] 2 mnmA tRNA 2‑thiouridine(34) synthase MnmA
* * ÷ NZ_CP009273 1193184 1193208 25 2 [1] [0] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1207736 1207818 83 3 [1] [1] 2 [BW25113_RS25985] [BW25113_RS25985]
* * ÷ NZ_CP009273 1211126 1211175 50 2 [1] [1] 2 bluF/ycgZ blue light‑responsive regulator BluF/regulatory protein YcgZ
* * ÷ NZ_CP009273 1240154 1240167 14 2 [1] [0] 2 ycgR/ymgE flagellar brake protein/GlsB/YeaQ/YmgE family stress response membrane protein
* * ÷ NZ_CP009273 1240320 1240401 82 2 [1] [0] 2 ymgE GlsB/YeaQ/YmgE family stress response membrane protein
* * ÷ NZ_CP009273 1248247 1248313 67 2 [1] [1] 2 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1253399 1253451 53 3 [1] [0] 2 pth aminoacyl‑tRNA hydrolase
* * ÷ NZ_CP009273 1253495 1253523 29 2 [0] [0] 2 pth aminoacyl‑tRNA hydrolase
* * ÷ NZ_CP009273 1255745 1255773 29 2 [1] [1] 3 dauA C4‑dicarboxylic acid transporter DauA
* * ÷ NZ_CP009273 1261635 1261656 22 2 [1] [0] 2 prmC peptide chain release factor N(5)‑glutamine methyltransferase
* * ÷ NZ_CP009273 1264406 1264507 102 2 [1] [1] 3 [kdsA] [kdsA]
* * ÷ NZ_CP009273 1268663 1268671 9 2 [1] [0] 2 chaC/ychN glutathione‑specific gamma‑glutamylcyclotransferase/DsrE/F sulfur relay family protein YchN
* * ÷ NZ_CP009273 1275360 1275390 31 2 [0] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1278595 1278625 31 2 [1] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1279896 1279930 35 3 [1] [1] 2 narH nitrate reductase subunit beta
* * ÷ NZ_CP009273 1280965 1281000 36 2 [1] [1] 2 narJ nitrate reductase molybdenum cofactor assembly chaperone
* * ÷ NZ_CP009273 1281144 1281213 70 2 [1] [1] 2 narJ nitrate reductase molybdenum cofactor assembly chaperone
* * ÷ NZ_CP009273 1281918 1281939 22 2 [1] [1] 2 narI respiratory nitrate reductase subunit gamma
* * ÷ NZ_CP009273 1283076 1283116 41 3 [1] [1] 3 [BW25113_RS06420] [BW25113_RS06420]
* * ÷ NZ_CP009273 1286135 1286210 76 2 [1] [1] 2 rssB two‑component system response regulator RssB
* * ÷ NZ_CP009273 1290368 1290378 11 3 [1] [0] 6 BW25113_RS06460 IS4 family transposase
* * ÷ NZ_CP009273 1305426 1305461 36 2 [0] [1] 2 tonB TonB system transport protein TonB
* * ÷ NZ_CP009273 1310948 1310987 40 3 [1] [1] 2 trpA tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1314370 1314400 31 2 [1] [0] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1314656 1314704 49 2 [1] [0] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1316503 1316531 29 2 [1] [1] 2 trpE anthranilate synthase component I
* * ÷ NZ_CP009273 1318211 1318244 34 2 [1] [1] 3 yciV RNase AM
* * ÷ NZ_CP009273 1320837 1320950 114 2 [1] [1] 2 [yciQ] [yciQ]
* * ÷ NZ_CP009273 1322973 1322976 4 2 [0] [1] 3 yciK YciK family oxidoreductase
* * ÷ NZ_CP009273 1341253 1341282 30 2 [1] [1] 2 rnb exoribonuclease II
* * ÷ NZ_CP009273 1342168 1342187 20 2 [1] [1] 2 rnb exoribonuclease II
* * ÷ NZ_CP009273 1346868 1346869 2 2 [0] [0] 2 sapF peptide ABC transporter ATP‑binding protein SapF
* * ÷ NZ_CP009273 1351861 1351928 68 2 [1] [1] 2 [ymjA] [ymjA]
* * ÷ NZ_CP009273 1356321 1356431 111 2 [1] [1] 2 puuR HTH‑type transcriptional regulator PuuR
* * ÷ NZ_CP009273 1357960 1358093 134 2 [1] [1] 2 puuC aldehyde dehydrogenase PuuC
* * ÷ NZ_CP009273 1359118 1359164 47 2 [0] [1] 2 puuB gamma‑glutamylputrescine oxidase
* * ÷ NZ_CP009273 1360756 1360764 9 2 [1] [1] 3 puuE 4‑aminobutyrate transaminase
* * ÷ NZ_CP009273 1361755 1361779 25 2 [1] [1] 2 pspF phage shock protein operon transcriptional activator
* * ÷ NZ_CP009273 1362637 1362647 11 2 [0] [1] 2 pspA phage shock protein PspA
* * ÷ NZ_CP009273 1367678 1367730 53 2 [1] [1] 2 ycjO sugar ABC transporter permease
* * ÷ NZ_CP009273 1370256 1370361 106 3 [1] [1] 4 [ycjQ]–[ycjR] [ycjQ],[ycjR]
* * ÷ NZ_CP009273 1370889 1370909 21 2 [1] [0] 4 ycjR sugar phosphate isomerase/epimerase
* * ÷ NZ_CP009273 1383779 1383813 35 2 [1] [1] 2 ycjG L‑Ala‑D/L‑Glu epimerase
* * ÷ NZ_CP009273 1403826 1403895 70 3 [1] [0] 3 dbpA ATP‑dependent RNA helicase DbpA
* * ÷ NZ_CP009273 1417948 1418050 103 2 [1] [1] 3 [trkG] [trkG]
* * ÷ NZ_CP009273 1424072 1424189 118 3 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1424712 1424722 11 2 [0] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1432362 1432372 11 2 [1] [0] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1433993 1434028 36 2 [1] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1446131 1446147 17 2 [1] [0] 2 paaZ phenylacetic acid degradation bifunctional protein PaaZ
* * ÷ NZ_CP009273 1453597 1453639 43 2 [1] [1] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1459170 1459221 52 2 [1] [1] 3 paaY phenylacetic acid degradation protein PaaY
* * ÷ NZ_CP009273 1469332 1469349 18 2 [1] [1] 2 [pdxI] [pdxI]
* * ÷ NZ_CP009273 1478940 1479009 70 2 [1] [1] 3 hrpA ATP‑dependent RNA helicase HrpA
* * ÷ NZ_CP009273 1481097 1481123 27 2 [1] [1] 2 hrpA ATP‑dependent RNA helicase HrpA
* * ÷ NZ_CP009273 1486987 1487039 53 2 [1] [1] 3 trg methyl‑accepting chemotaxis protein Trg
* * ÷ NZ_CP009273 1495245 1495282 38 2 [1] [1] 6 tehA dicarboxylate transporter/tellurite‑resistance protein TehA
* * ÷ NZ_CP009273 1499532 1499574 43 2 [1] [1] 3 ydcO BenE family transporter YdcO
* * ÷ NZ_CP009273 1509394 1509454 61 2 [1] [1] 3 ydcV ABC transporter permease
* * ÷ NZ_CP009273 1521129 1521154 26 3 [1] [1] 2 yncG/yncH glutathione S‑transferase family protein/YncH family protein
* * ÷ NZ_CP009273 1521464 1521479 16 2 [1] [1] 2 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1524258 1524359 102 2 [1] [1] 2 BW25113_RS07645/BW25113_RS26145 RHS repeat protein/hypothetical protein
* * ÷ NZ_CP009273 1524578 1524611 34 2 [1] [1] 3 BW25113_RS26145
BW25113_RS25600		 hypothetical protein
protein YncO
* * ÷ NZ_CP009273 1524690 1524700 11 2 [0] [0] 2 BW25113_RS25600 protein YncO
* * ÷ NZ_CP009273 1528883 1528891 9 2 [1] [1] 3 nhoA N‑hydroxyarylamine O‑acetyltransferase
* * ÷ NZ_CP009273 1529970 1530004 35 2 [1] [1] 2 yddE PhzF family isomerase
* * ÷ NZ_CP009273 1540369 1540460 92 2 [1] [0] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1544478 1544571 94 2 [1] [1] 2 fdnG formate dehydrogenase‑N subunit alpha
* * ÷ NZ_CP009273 1549082 1549109 28 2 [1] [1] 2 maeA malate dehydrogenase
* * ÷ NZ_CP009273 1584175 1584185 11 2 [0] [0] 2 ydeT fimbria/pilus outer membrane usher protein
* * ÷ NZ_CP009273 1591288 1591301 14 3 [1] [1] 2 BW25113_RS07915 ECSE_1600 family autotransporter
* * ÷ NZ_CP009273 1592531 1592622 92 3 [1] [1] 3 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1595521 1595566 46 2 [0] [1] 2 lsrR/lsrA transcriptional regulator LsrR/autoinducer 2 ABC transporter ATP‑binding protein LsrA
* * ÷ NZ_CP009273 1607042 1607085 44 3 [1] [0] 2 glsB glutaminase B
* * ÷ NZ_CP009273 1608789 1608893 105 3 [1] [1] 2 sad succinate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1655228 1655249 22 3 [1] [1] 2 ynfF dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1655643 1655695 53 3 [1] [0] 2 ynfF dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1655915 1655948 34 2 [1] [1] 2 ynfF dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1663173 1663181 9 2 [0] [1] 2 ynfL LysR family transcriptional regulator
* * ÷ NZ_CP009273 1663822 1663889 68 2 [1] [1] 2 [ynfL] [ynfL]
* * ÷ NZ_CP009273 1673774 1673785 12 2 [1] [1] 2 ydgH/ydgI DUF1471 family protein YdgH/amino acid permease
* * ÷ NZ_CP009273 1685403 1685477 75 2 [1] [1] 3 ydgA YdgA family protein
* * ÷ NZ_CP009273 1689203 1689228 26 2 [0] [1] 2 uidA beta‑glucuronidase
* * ÷ NZ_CP009273 1692164 1692172 9 2 [1] [0] 2 hdhA 7‑alpha‑hydroxysteroid dehydrogenase
* * ÷ NZ_CP009273 1700686 1700776 91 2 [1] [1] 2 rsxB electron transport complex subunit RsxB
* * ÷ NZ_CP009273 1705760 1705770 11 2 [0] [0] 2 rsxE electron transport complex subunit RsxE
* * ÷ NZ_CP009273 1709677 1709728 52 2 [1] [1] 4 pdxY pyridoxal kinase
* * ÷ NZ_CP009273 1711750 1711824 75 2 [1] [1] 2 pdxH pyridoxamine 5'‑phosphate oxidase
* * ÷ NZ_CP009273 1712906 1712987 82 2 [1] [1] 2 anmK anhydro‑N‑acetylmuramic acid kinase
* * ÷ NZ_CP009273 1717908 1717918 11 3 [0] [1] 2 ydhK FUSC family protein
* * ÷ NZ_CP009273 1727199 1727200 2 3 [0] [0] 2 lhr ATP‑dependent helicase
* * ÷ NZ_CP009273 1731220 1731275 56 2 [1] [1] 3 ydhP MFS transporter
* * ÷ NZ_CP009273 1745869 1745903 35 2 [1] [1] 2 ydhW YdhW family putative oxidoreductase system protein
* * ÷ NZ_CP009273 1746482 1746522 41 2 [1] [0] 2 ydhV aldehyde ferredoxin oxidoreductase
* * ÷ NZ_CP009273 1748953 1748990 38 2 [1] [1] 3 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1749816 1749850 35 2 [0] [1] 4 BW25113_RS26160 protein YnhH
* * ÷ NZ_CP009273 1751883 1751920 38 2 [1] [1] 2 [lpp] [lpp]
* * ÷ NZ_CP009273 1765873 1765893 21 2 [0] [1] 4 ydiM MFS transporter
* * ÷ NZ_CP009273 1771241 1771266 26 3 [1] [0] 3 ydiF acyl CoA:acetate/3‑ketoacid CoA transferase
* * ÷ NZ_CP009273 1771603 1771634 32 2 [0] [0] 2 ydiO acyl‑CoA dehydrogenase
* * ÷ NZ_CP009273 1773536 1773567 32 6 [1] [1] 3 [ydiP] [ydiP]
* * ÷ NZ_CP009273 1780107 1780161 55 3 [1] [1] 2 ppsA phosphoenolpyruvate synthase
* * ÷ NZ_CP009273 1792832 1792861 30 2 [1] [0] 2 pheS phenylalanine‑‑tRNA ligase subunit alpha
* * ÷ NZ_CP009273 1793345 1793381 37 2 [1] [1] 2 pheS/pheM phenylalanine‑‑tRNA ligase subunit alpha/pheST operon leader peptide PheM
* * ÷ NZ_CP009273 1796177 1796217 41 2 [1] [1] 2 thrS threonine‑‑tRNA ligase
* * ÷ NZ_CP009273 1807414 1807434 21 2 [1] [0] 2 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1823115 1823167 53 2 [1] [0] 2 astD succinylglutamate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1829215 1829228 14 2 [0] [1] 2 ydjZ TVP38/TMEM64 family protein
* * ÷ NZ_CP009273 1831095 1831138 44 2 [1] [1] 2 ynjB ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1834090 1834140 51 3 [1] [1] 2 ynjE thiosulfate sulfurtransferase YnjE
* * ÷ NZ_CP009273 1858524 1858589 66 2 [1] [1] 2 yeaD D‑hexose‑6‑phosphate mutarotase
* * ÷ NZ_CP009273 1863678 1863682 5 2 [1] [1] 2 yeaH YeaH/YhbH family protein
* * ÷ NZ_CP009273 1869502 1869532 31 2 [1] [1] 2 nimR DNA‑binding transcriptional regulator NimR
* * ÷ NZ_CP009273 1875765 1875775 11 2 [1] [0] 2 dmlR DNA‑binding transcriptional regulator DmlR
* * ÷ NZ_CP009273 1879179 1879183 5 2 [1] [0] 3 yeaW carnitine monooxygenase subunit YeaW
* * ÷ NZ_CP009273 1896667 1896784 118 3 [0] [1] 2 manX PTS mannose transporter subunit IIAB
* * ÷ NZ_CP009273 1897147 1897154 8 2 [1] [0] 2 manX PTS mannose transporter subunit IIAB
* * ÷ NZ_CP009273 1907980 1908002 23 2 [0] [1] 2 prc carboxy terminal‑processing peptidase
* * ÷ NZ_CP009273 1908243 1908259 17 2 [1] [0] 3 prc carboxy terminal‑processing peptidase
* * ÷ NZ_CP009273 1915609 1915616 8 2 [1] [1] 2 rsmF 16S rRNA (cytosine(1407)‑C(5))‑methyltransferase RsmF
* * ÷ NZ_CP009273 1918631 1918646 16 2 [0] [1] 2 copD copper homeostasis membrane protein CopD
* * ÷ NZ_CP009273 1940394 1940460 67 2 [1] [1] 2 [yobI] [yobI]
* * ÷ NZ_CP009273 1945204 1945322 119 3 [1] [0] 2 yecD hydrolase
* * ÷ NZ_CP009273 1945870 1945915 46 3 [0] [1] 2 yecE DUF72 domain‑containing protein
* * ÷ NZ_CP009273 1961009 1961030 22 2 [1] [1] 4 cheZ protein phosphatase CheZ
* * ÷ NZ_CP009273 1972752 1972755 4 9 [0] [1] 3 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1974523 1974577 55 2 [1] [1] 3 otsA alpha,alpha‑trehalose‑phosphate synthase
* * ÷ NZ_CP009273 1982148 1982181 34 2 [1] [1] 3 yecR/ftnA YecR‑like lipofamily protein/non‑heme ferritin
* * ÷ NZ_CP009273 2001515 2001585 71 2 [0] [1] 3 [yedD] [yedD]
* * ÷ NZ_CP009273 2001677 2001714 38 2 [1] [1] 4 yedD/yedE lipoprotein/selenium metabolism membrane protein YedE/FdhT
* * ÷ NZ_CP009273 2007218 2007262 45 2 [1] [1] 2 fliF flagellar basal‑body MS‑ring/collar protein FliF
* * ÷ NZ_CP009273 2010170 2010194 25 2 [1] [0] 2 fliI flagellar protein export ATPase FliI
* * ÷ NZ_CP009273 2010340 2010421 82 2 [1] [1] 3 fliI flagellar protein export ATPase FliI
* * ÷ NZ_CP009273 2013681 2013701 21 2 [1] [1] 2 fliM flagellar motor switch protein FliM
* * ÷ NZ_CP009273 2014725 2014777 53 2 [1] [0] 2 fliN flagellar motor switch protein FliN
* * ÷ NZ_CP009273 2015386 2015400 15 3 [1] [0] 4 fliP flagellar type III secretion system pore protein FliP
* * ÷ NZ_CP009273 2021075 2021102 28 2 [1] [1] 2 yedQ cellulose biosynthesis regulator diguanylate cyclase DgcQ
* * ÷ NZ_CP009273 2024324 2024359 36 2 [1] [1] 2 vsr VSPR family DNA mismatch endonuclease
* * ÷ NZ_CP009273 2027367 2027377 11 2 [0] [1] 3 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2037889 2037911 23 3 [1] [1] 2 mtfA DgsA anti‑repressor MtfA
* * ÷ NZ_CP009273 2050131 2050275 145 2 [1] [1] 2 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2053165 2053167 3 2 [0] [0] 2 yeeO toxic metabolite efflux MATE transporter YeeO
* * ÷ NZ_CP009273 2062034 2062085 52 3 [1] [1] 2 BW25113_RS10415/BW25113_RS24005 IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 2077062 2077067 6 2 [0] [1] 3 sbcB exodeoxyribonuclease I
* * ÷ NZ_CP009273 2079314 2079356 43 2 [1] [1] 2 plaP putrescine/proton symporter PlaP
* * ÷ NZ_CP009273 2099584 2099664 81 2 [1] [0] 3 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2101613 2101659 47 2 [0] [1] 2 glf UDP‑galactopyranose mutase
* * ÷ NZ_CP009273 2110508 2110540 33 2 [1] [1] 2 wcaL colanic acid biosynthesis glycosyltransferase WcaL
* * ÷ NZ_CP009273 2112824 2112854 31 2 [1] [1] 2 wzxC colanic acid undecaprenyl disphosphate flippase WzxC
* * ÷ NZ_CP009273 2118326 2118347 22 2 [1] [0] 2 wcaI colanic acid biosynthesis fucosyltransferase WcaI
* * ÷ NZ_CP009273 2143009 2143083 75 2 [1] [1] 2 yegI protein kinase YegI
* * ÷ NZ_CP009273 2144680 2144689 10 3 [1] [0] 3 yegJ DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2154453 2154461 9 3 [1] [0] 2 mdtC multidrug efflux RND transporter permease subunit MdtC
* * ÷ NZ_CP009273 2162813 2162849 37 2 [0] [1] 2 yegS lipid kinase YegS
* * ÷ NZ_CP009273 2165720 2165721 2 2 [0] [0] 3 gatD galactitol‑1‑phosphate 5‑dehydrogenase
* * ÷ NZ_CP009273 2182290 2182302 13 2 [0] [1] 2 yehB fimbrial biogenesis outer membrane usher protein
* * ÷ NZ_CP009273 2190083 2190105 23 2 [1] [0] 2 BW25113_RS25680 WGR and DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2201039 2201070 32 2 [1] [1] 3 yehM DUF5682 family protein
* * ÷ NZ_CP009273 2211984 2212026 43 2 [1] [1] 2 yehY glycine betaine ABC transporter permease YehY
* * ÷ NZ_CP009273 2227605 2227628 24 3 [1] [1] 2 preT NAD‑dependent dihydropyrimidine dehydrogenase subunit PreT
* * ÷ NZ_CP009273 2239061 2239086 26 3 [1] [1] 2 cirA catecholate siderophore receptor CirA
* * ÷ NZ_CP009273 2246436 2246477 42 2 [0] [1] 3 nupX NupC/NupG family nucleoside CNT transporter
* * ÷ NZ_CP009273 2251102 2251120 19 2 [1] [1] 4 psuG pseudouridine‑5'‑phosphate glycosidase
* * ÷ NZ_CP009273 2257537 2257640 104 2 [1] [1] 2 setB sugar efflux transporter SetB
* * ÷ NZ_CP009273 2260936 2260956 21 2 [1] [1] 3 yeiQ mannitol dehydrogenase family protein
* * ÷ NZ_CP009273 2266630 2266645 16 2 [0] [1] 3 yejA extracellular solute‑binding protein
* * ÷ NZ_CP009273 2275346 2275435 90 2 [0] [1] 3 radD DEAD/DEAH box helicase
* * ÷ NZ_CP009273 2289624 2289662 39 2 [1] [1] 2 ccmC heme exporter protein CcmC
* * ÷ NZ_CP009273 2294580 2294588 9 2 [0] [0] 2 napA periplasmic nitrate reductase subunit alpha
* * ÷ NZ_CP009273 2303421 2303428 8 2 [0] [0] 2 ada bifunctional DNA‑binding transcriptional regulator/O6‑methylguanine‑DNA methyltransferase Ada
* * ÷ NZ_CP009273 2303519 2303562 44 2 [0] [1] 2 ada bifunctional DNA‑binding transcriptional regulator/O6‑methylguanine‑DNA methyltransferase Ada
* * ÷ NZ_CP009273 2321403 2321408 6 2 [0] [0] 3 yfaP YfaP family protein
* * ÷ NZ_CP009273 2352455 2352474 20 2 [1] [1] 2 yfaV MFS transporter
* * ÷ NZ_CP009273 2352579 2352610 32 2 [1] [0] 2 yfaV MFS transporter
* * ÷ NZ_CP009273 2355565 2355587 23 2 [1] [1] 2 yfaX helix‑turn‑helix domain‑containing protein
* * ÷ NZ_CP009273 2356122 2356182 61 3 [1] [1] 4 yfaY nicotinamide mononucleotide deamidase‑related protein YfaY
* * ÷ NZ_CP009273 2368903 2368956 54 2 [1] [1] 2 menC o‑succinylbenzoate synthase
* * ÷ NZ_CP009273 2384629 2384644 16 2 [1] [0] 2 nuoN NADH‑quinone oxidoreductase subunit NuoN
* * ÷ NZ_CP009273 2402209 2402218 10 2 [1] [0] 2 alaA alanine transaminase AlaA
* * ÷ NZ_CP009273 2453084 2453112 29 3 [0] [1] 2 fadI acetyl‑CoA C‑acyltransferase FadI
* * ÷ NZ_CP009273 2462889 2462961 73 2 [0] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463685 2463748 64 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2538326 2538331 6 2 [0] [1] 3 murR HTH‑type transcriptional regulator MurR
* * ÷ NZ_CP009273 2544802 2544814 13 2 [1] [1] 5 yfeZ DUF2919 domain‑containing protein
* * ÷ NZ_CP009273 2559761 2559808 48 2 [1] [1] 2 eutA ethanolamine ammonia‑lyase reactivating factor EutA
* * ÷ NZ_CP009273 2564567 2564575 9 2 [1] [0] 2 eutE aldehyde dehydrogenase EutE
* * ÷ NZ_CP009273 2567281 2567323 43 2 [1] [1] 4 eutT ethanolamine utilization cob(I)yrinic acid a,c‑diamide adenosyltransferase EutT
* * ÷ NZ_CP009273 2584443 2584469 27 3 [1] [1] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2587784 2587802 19 2 [1] [1] 2 tmcA tRNA cytosine(34) acetyltransferase TmcA
* * ÷ NZ_CP009273 2589909 2589930 22 2 [1] [0] 3 ypfJ neutral zinc metallopeptidase
* * ÷ NZ_CP009273 2605127 2605162 36 2 [1] [0] 2 hyfJ hydrogenase 4 assembly chaperone HyfJ
* * ÷ NZ_CP009273 2622997 2623019 23 2 [1] [1] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2640286 2640330 45 3 [0] [0] 2 pbpC peptidoglycan glycosyltransferase PbpC
* * ÷ NZ_CP009273 2648345 2648353 9 2 [1] [1] 3 sseB/pepB enhanced serine sensitivity protein SseB/aminopeptidase PepB
* * ÷ NZ_CP009273 2651510 2651557 48 2 [0] [1] 2 hscA Fe‑S protein assembly chaperone HscA
* * ÷ NZ_CP009273 2653469 2653519 51 2 [1] [0] 2 iscU Fe‑S cluster assembly scaffold IscU
* * ÷ NZ_CP009273 2675492 2675531 40 2 [1] [0] 2 yphG DUF5107 domain‑containing protein
* * ÷ NZ_CP009273 2686065 2686133 69 2 [1] [1] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2699944 2699994 51 2 [1] [0] 2 lepA translation elongation factor 4
* * ÷ NZ_CP009273 2712453 2712517 65 2 [1] [1] 4 [trxC] [trxC]
* * ÷ NZ_CP009273 2712682 2712723 42 3 [1] [1] 2 tapT tRNA‑uridine aminocarboxypropyltransferase
* * ÷ NZ_CP009273 2727874 2727914 41 3 [1] [0] 2 pgeF purine nucleoside phosphorylase YfiH
* * ÷ NZ_CP009273 2740220 2740253 34 2 [1] [0] 2 ffh signal recognition particle protein
* * ÷ NZ_CP009273 2753693 2753723 31 2 [1] [1] 2 yfjI YfjI family protein
* * ÷ NZ_CP009273 2768203 2768218 16 3 [1] [1] 3 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2777884 2777939 56 3 [0] [1] 2 BW25113_RS25705 DUF5507 domain‑containing protein
* * ÷ NZ_CP009273 2786814 2786855 42 2 [1] [0] 2 gabT 4‑aminobutyrate‑‑2‑oxoglutarate transaminase
* * ÷ NZ_CP009273 2822076 2822109 34 3 [1] [0] 3 gutM transcriptional regulator GutM
* * ÷ NZ_CP009273 2826609 2826639 31 2 [1] [1] 3 norV anaerobic nitric oxide reductase flavorubredoxin
* * ÷ NZ_CP009273 2871427 2871440 14 3 [1] [1] 2 iap/cas2e alkaline phosphatase isozyme conversion aminopeptidase/type I‑E CRISPR‑associated endoribonuclease Cas2e
* * ÷ NZ_CP009273 2877632 2877663 32 2 [1] [1] 2 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2897098 2897158 61 4 [1] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2923652 2923704 53 2 [1] [1] 2 sdaB L‑serine ammonia‑lyase II
* * ÷ NZ_CP009273 2924822 2924831 10 3 [0] [1] 3 xni flap endonuclease Xni
* * ÷ NZ_CP009273 3160027 3160040 14 3 [0] [0] 2 ygiS ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 3178632 3178655 24 2 [1] [1] 2 ubiK/ygiL ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
* * ÷ NZ_CP009273 3280217 3280226 10 3 [0] [1] 2 agaI galactosamine‑6‑phosphate isomerase
* * ÷ NZ_CP009273 3350753 3350783 31 2 [1] [1] 2 gltB glutamate synthase large subunit
* * ÷ NZ_CP009273 3354275 3354285 11 2 [1] [0] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3560380 3560403 24 2 [1] [0] 2 glgA glycogen synthase GlgA
* * ÷ NZ_CP009273 3582860 3582897 38 2 [0] [1] 3 ugpE sn‑glycerol‑3‑phosphate ABC transporter permease UgpE
* * ÷ NZ_CP009273 3689312 3689330 19 2 [1] [1] 2 [bcsQ] [bcsQ]
* * ÷ NZ_CP009273 4233507 4233531 25 2 [1] [1] 2 malF maltose ABC transporter permease MalF
* * ÷ NZ_CP009273 4306301 4306326 26 2 [1] [1] 2 phnM alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase
* * ÷ NZ_CP009273 4316729 4316749 21 4 [1] [1] 2 yjdM/crfC zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)30 (2.600) 19/170 0.0 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 19727510 (0.000)9 (0.780) 8/170 0.3 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =6 (0.520)5 (0.490) 5/152 0.5 36.5% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 12 (1.160)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA