mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 54 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 595,032 | 0 | T | G | 68.4% | 3.1 / 10.1 | 19 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 67.4% | 1.2 / 39.9 | 43 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 63.2% | ‑6.6 / 15.0 | 20 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 63.2% | ‑0.6 / 17.0 | 19 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 61.9% | 3.9 / 19.3 | 21 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 61.1% | ‑0.5 / 16.6 | 18 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 60.5% | 4.8 / 48.4 | 43 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 228,191 | 0 | A | G | 60.0% | 7.5 / 20.3 | 20 | S195G (AGC→GGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 60.0% | ‑1.7 / 12.5 | 15 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 59.1% | 3.4 / 21.0 | 22 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 57.9% | 3.3 / 17.0 | 19 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 653,356 | 0 | A | C | 57.9% | 17.2 / 21.4 | 19 | G13G (GGT→GGG) | crcB | fluoride efflux transporter CrcB |
| * | NZ_CP009273 | 3,569,316 | 0 | A | C | 57.7% | 22.2 / 32.8 | 26 | V369G (GTG→GGG) | gntU | gluconate transporter |
| * | NZ_CP009273 | 546,689 | 0 | T | G | 56.2% | 12.2 / 18.9 | 16 | S265R (AGT→AGG) | ybcF | carbamate kinase |
| * | NZ_CP009273 | 1,267,278 | 0 | T | G | 54.5% | 7.6 / 12.8 | 11 | T10P (ACC→CCC) | chaA | sodium‑potassium/proton antiporter ChaA |
| * | NZ_CP009273 | 1,267,283 | 0 | A | T | 54.5% | ‑1.1 / 12.2 | 11 | V8E (GTA→GAA) | chaA | sodium‑potassium/proton antiporter ChaA |
| * | NZ_CP009273 | 3,175,960 | 0 | G | T | 54.5% | 17.3 / 31.9 | 22 | G18C (GGC→TGC) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 54.2% | 20.7 / 32.5 | 24 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| * | NZ_CP009273 | 1,698,298 | 0 | G | T | 53.8% | 5.2 / 21.3 | 13 | H90N (CAT→AAT) | ydgJ | oxidoreductase |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 53.6% | 12.6 / 41.4 | 28 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |