mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 234 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 832,048 | 0 | T | G | 60.0% | 41.8 / 61.4 | 50 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 56.0% | 41.7 / 64.5 | 50 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 55.2% | 11.2 / 36.2 | 29 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 55.2% | 19.5 / 35.0 | 29 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 53.7% | 79.1 / 100.6 | 67 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 53.2% | 35.4 / 112.5 | 79 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 52.8% | 38.7 / 80.9 | 53 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 52.5% | 68.4 / 77.2 | 61 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 52.4% | 74.7 / 83.3 | 64 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 52.2% | 17.9 / 30.4 | 23 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| * | NZ_CP009273 | 2,023,591 | 0 | T | G | 51.6% | 32.3 / 45.2 | 31 | V191G (GTG→GGG) | yedA | drug/metabolite exporter YedA |
| * | NZ_CP009273 | 782,311 | 0 | A | C | 51.3% | 47.1 / 60.0 | 37 | G247G (GGT→GGG) | gpmA | 2,3‑diphosphoglycerate‑dependent phosphoglycerate mutase |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 50.0% | 25.7 / 24.9 | 30 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 49.4% | 45.1 / 60.9 | 79 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 49.0% | 42.1 / 23.0 | 49 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 48.8% | 38.6 / 24.1 | 41 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 48.7% | 110.5 / 11.9 | 79 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 48.6% | 74.9 / 29.9 | 74 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 822,410 | 0 | A | T | 48.4% | 30.6 / 14.8 | 31 | I100N (ATT→AAT) | ybhS | ABC transporter permease |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 47.0% | 89.0 / 46.5 | 66 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |