mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 47 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 62.5% | 6.3 / 15.9 | 16 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,726,640 | 0 | T | A | 62.5% | ‑2.8 / 26.5 | 24 | N360K (AAT→AAA) | xylG | D‑xylose ABC transporter ATP‑binding protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 61.5% | ‑3.2 / 23.2 | 26 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 61.1% | 20.1 / 33.2 | 36 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 60.0% | 3.7 / 16.1 | 15 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 3,659,046 | 0 | A | T | 60.0% | 13.4 / 43.7 | 35 | I42N (ATT→AAT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 57.7% | ‑2.8 / 23.9 | 26 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 108,789 | 0 | T | C | 57.1% | 8.0 / 23.5 | 21 | S100G (AGC→GGC) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 57.1% | ‑2.1 / 15.2 | 14 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 57.1% | 6.1 / 14.7 | 14 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 57.1% | 12.0 / 14.9 | 14 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 2,860,603 | 0 | A | T | 57.1% | ‑1.5 / 19.2 | 21 | V103E (GTA→GAA) | rpoS | RNA polymerase sigma factor RpoS |
| * | NZ_CP009273 | 3,029,116 | 0 | A | C | 57.1% | 6.8 / 16.4 | 14 | G175G (GGT→GGG) | prfB | peptide chain release factor 2 |
| * | NZ_CP009273 | 4,419,801 | 0 | T | G | 56.5% | 11.5 / 26.4 | 23 | L41V (TTG→GTG) | cycA | D‑serine/D‑alanine/glycine transporter |
| * | NZ_CP009273 | 669,219 | 0 | G | C | 56.2% | 4.3 / 15.8 | 16 | H341D (CAC→GAC) | leuS | leucine‑‑tRNA ligase |
| * | NZ_CP009273 | 3,012,922 | 0 | T | G | 56.2% | 9.4 / 20.1 | 16 | S135A (TCG→GCG) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 497,028 | 0 | A | C | 55.6% | 29.0 / 37.5 | 27 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 55.6% | 25.6 / 38.9 | 27 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 55.6% | 4.3 / 46.9 | 36 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 54.5% | ‑2.5 / 12.1 | 11 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |