mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 234700 | 234711 | 12 | 2 [1] | [0] 2 | BW25113_RS01090/BW25113_RS01095 | lipoprotein/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 356981 | 357574 | 594 | 5 [0] | [1] 3 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 724899 | 724931 | 33 | 2 [0] | [1] 2 | ybfA/rhsC | YbfA family protein/rhs element protein RhsC |
| * | * | ÷ | NZ_CP009273 | 902993 | 903059 | 67 | 2 [1] | [1] 3 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 982929 | 982958 | 30 | 3 [1] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 993192 | 993226 | 35 | 3 [1] | [0] 2 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
| * | * | ÷ | NZ_CP009273 | 1207466 | 1207535 | 70 | 2 [0] | [1] 2 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
| * | * | ÷ | NZ_CP009273 | 1267301 | 1267311 | 11 | 3 [1] | [0] 2 | [chaA] | [chaA] |
| * | * | ÷ | NZ_CP009273 | 1284844 | 1284852 | 9 | 3 [0] | [1] 2 | rssA | patatin‑like phospholipase RssA |
| * | * | ÷ | NZ_CP009273 | 1459458 | 1459473 | 16 | 2 [1] | [1] 2 | BW25113_RS25580 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1540397 | 1540419 | 23 | 2 [1] | [1] 2 | yddL/yddG | porin/aromatic amino acid efflux DMT transporter YddG |
| * | * | ÷ | NZ_CP009273 | 1631368 | 1631418 | 51 | 4 [1] | [1] 2 | ydfO | DUF1398 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2778533 | 2778555 | 23 | 2 [1] | [1] 2 | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 290192 | 39 (1.670) | 21 (0.900) | 13/166 | 0.5 | 35.0% | coding (319/855 nt) | BW25113_RS01425 | hypothetical protein |
| ? | NZ_CP009273 | = 378046 | NA (NA) | pseudogene (262/264 nt) | BW25113_RS23340 | acetyltransferase | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 78 (3.330) | 33/166 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 9 (0.380) | 5 (0.270) | 4/134 | 1.3 | 36.7% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 10 (0.530) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 9 (0.390) | 5/164 | 1.4 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 32 (1.370) | 20/166 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 4532499 = | 2 (0.090) | 6 (0.290) | 6/148 | 1.1 | 44.8% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 13 (0.620) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 2 (0.090) | 10 (0.480) | 8/148 | 0.8 | 57.5% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 13 (0.620) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||