mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 42 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 765,675 | 0 | A | C | 68.4% | 10.6 / 15.1 | 19 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 60.0% | 4.6 / 13.7 | 15 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 371,042 | 0 | A | C | 58.8% | ‑0.2 / 15.8 | 17 | Q43P (CAG→CCG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 2,134,407 | 0 | A | C | 57.1% | 7.8 / 14.0 | 14 | G229G (GGT→GGG) | asmA | outer membrane assembly protein AsmA |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 57.1% | 5.1 / 20.6 | 21 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 57.1% | 7.9 / 11.7 | 14 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 56.2% | 12.2 / 18.7 | 16 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 4,091,442 | 0 | G | T | 56.2% | 6.5 / 22.7 | 16 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 4,213,521 | 0 | T | G | 56.2% | 16.7 / 20.4 | 16 | K12N (AAA→AAC) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 29,496 | 0 | T | A | 54.5% | ‑0.8 / 13.3 | 11 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 54.5% | 2.5 / 11.8 | 11 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 54.5% | 8.6 / 13.6 | 11 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| * | NZ_CP009273 | 2,636,048 | 0 | T | G | 54.5% | 8.7 / 13.3 | 11 | A52A (GCA→GCC) | rodZ | cytoskeleton protein RodZ |
| * | NZ_CP009273 | 228,175 | 0 | A | G | 53.8% | 7.6 / 13.9 | 13 | G189G (GGA→GGG) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 53.8% | 2.6 / 13.3 | 13 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 4,544,923 | 0 | C | A | 53.8% | 14.9 / 45.2 | 26 | N177K (AAC→AAA) | uxuR | Uxu operon transcriptional regulator |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 53.3% | 12.6 / 16.8 | 15 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 53.3% | 9.8 / 18.0 | 15 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 2,388,923 | 0 | A | C | 52.6% | 19.6 / 28.3 | 19 | G151G (GGT→GGG) | nuoJ | NADH‑quinone oxidoreductase subunit J |
| * | NZ_CP009273 | 1,430,449 | 0 | A | C | 52.0% | 28.6 / 33.9 | 25 | G234G (GGT→GGG) | ompN | porin OmpN |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 290186 = | 39 (1.670) | 9 (0.390) | 7/162 | 1.0 | 19.1% | coding (325/855 nt) | BW25113_RS01425 | hypothetical protein |
| ? | NZ_CP009273 | 376718 = | NA (NA) | coding (26/444 nt) | BW25113_RS01855 | transferase | |||||