mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 66 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,679,006 | 0 | A | C | 68.8% | ‑0.1 / 11.6 | 16 | D164A (GAC→GCC) | tus | DNA replication terminus site‑binding protein |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 66.7% | 3.4 / 12.6 | 15 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,213,870 | 0 | A | C | 66.7% | 11.9 / 19.9 | 21 | T363P (ACC→CCC) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 66.7% | 5.6 / 14.3 | 21 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 65.0% | ‑3.6 / 21.2 | 20 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 63.8% | ‑0.7 / 51.2 | 48 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 108,789 | 0 | T | C | 63.2% | 2.2 / 13.6 | 19 | S100G (AGC→GGC) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 1,663,765 | 0 | T | A | 62.5% | 3.8 / 15.9 | 16 | I29F (ATT→TTT) | ynfL | LysR family transcriptional regulator |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 62.5% | ‑2.9 / 48.7 | 48 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 822,957 | 0 | A | G | 58.8% | 11.8 / 19.6 | 17 | L494P (CTC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,023,591 | 0 | T | G | 58.3% | 5.9 / 12.8 | 12 | V191G (GTG→GGG) | yedA | drug/metabolite exporter YedA |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 57.9% | 9.4 / 24.1 | 20 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 57.1% | 12.4 / 17.4 | 21 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 57.1% | 27.6 / 36.6 | 29 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 57.1% | 9.3 / 24.2 | 21 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 56.7% | 7.9 / 33.7 | 30 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 56.2% | 10.6 / 19.5 | 16 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 4,086,499 | 0 | C | A | 56.0% | 7.6 / 33.6 | 25 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 55.6% | 9.4 / 24.3 | 18 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,476,148 | 0 | T | C | 55.6% | 7.3 / 18.9 | 18 | F336S (TTC→TCC) | ynbD | phosphatase PAP2/dual specificity phosphatase family protein |