mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 67 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 66.7% | ‑5.3 / 15.5 | 22 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 1,976,000 | 0 | T | G | 64.3% | 5.3 / 11.3 | 14 | intergenic (‑132/+35) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 64.0% | 9.0 / 24.7 | 25 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 61.1% | 3.8 / 21.7 | 18 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 57.5% | 5.2 / 47.9 | 40 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 807,177 | 0 | T | G | 56.5% | 7.5 / 21.0 | 23 | V67G (GTG→GGG) | bioC | malonyl‑ACP O‑methyltransferase BioC |
| * | NZ_CP009273 | 1,377,991 | 0 | A | C | 55.6% | 14.0 / 17.6 | 18 | G76G (GGT→GGG) | ycjW | LacI family DNA‑binding transcriptional regulator |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 55.6% | 7.7 / 22.3 | 18 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 4,213,521 | 0 | T | G | 55.6% | 30.3 / 37.1 | 27 | K12N (AAA→AAC) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 4,213,525 | 0 | C | T | 55.6% | 3.3 / 33.5 | 27 | R11K (AGA→AAA) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 276,800 | 0 | A | C | 55.0% | 20.2 / 26.2 | 20 | Y299D (TAT→GAT) | yagA | IS481‑like element ISEc19 family transposase |
| * | NZ_CP009273 | 170,552 | 0 | A | C | 54.5% | 19.9 / 27.0 | 23 | V273G (GTA→GGA) | hemL | glutamate‑1‑semialdehyde 2,1‑aminomutase |
| * | NZ_CP009273 | 883,488 | 0 | T | A | 54.5% | 6.4 / 24.1 | 22 | intergenic (+73/+102) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 54.5% | 8.6 / 29.1 | 22 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 53.8% | 10.0 / 15.5 | 14 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 4,227,178 | 0 | T | C | 53.8% | 4.4 / 11.7 | 13 | D118D (GAT→GAC) | yjbG | capsule biosynthesis GfcC family protein |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 53.6% | 14.5 / 28.6 | 28 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 53.3% | 12.2 / 19.2 | 15 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 982,470 | 0 | A | C | 52.9% | 12.6 / 20.1 | 17 | intergenic (‑32/+571) | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | NZ_CP009273 | 1,540,683 | 0 | A | C | 52.9% | 11.1 / 17.0 | 17 | G248G (GGT→GGG) | yddG | aromatic amino acid efflux DMT transporter YddG |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2707188 | 25 (0.840) | 3 (0.120) | 3/146 | 2.2 | 10.6% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NZ_CP009273 | = 2707267 | 29 (1.120) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NZ_CP009273 | 2006338 = | 21 (0.700) | 3 (0.110) | 3/148 | 2.2 | 14.5% | coding (158/315 nt) | fliE | flagellar hook‑basal body complex protein FliE |
| ? | NZ_CP009273 | 2006392 = | 17 (0.640) | coding (104/315 nt) | fliE | flagellar hook‑basal body complex protein FliE | |||||
| * | ? | NZ_CP009273 | = 4505647 | 18 (0.600) | 3 (0.100) | 3/162 | 2.4 | 14.5% | coding (848/2325 nt) | fecA | Fe(3+) dicitrate transport protein FecA |
| ? | NZ_CP009273 | 4505651 = | 18 (0.620) | coding (844/2325 nt) | fecA | Fe(3+) dicitrate transport protein FecA | |||||
| * | ? | NZ_CP009273 | 1955597 = | 25 (0.840) | 3 (0.100) | 3/168 | 2.4 | 7.7% | coding (1279/1734 nt) | argS | arginine‑‑tRNA ligase |
| ? | NZ_CP009273 | 1955639 = | 47 (1.570) | coding (1321/1734 nt) | argS | arginine‑‑tRNA ligase | |||||