mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 71 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 976,689 | 0 | A | G | 62.5% | ‑2.5 / 12.8 | 16 | I63V (ATC→GTC) | ldtD | L,D‑transpeptidase |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 62.5% | ‑6.4 / 15.2 | 16 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,152,745 | 0 | A | G | 58.3% | 4.1 / 10.3 | 12 | G171G (GGA→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 1,377,991 | 0 | A | C | 58.3% | 8.4 / 11.3 | 12 | G76G (GGT→GGG) | ycjW | LacI family DNA‑binding transcriptional regulator |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 57.5% | 5.6 / 44.6 | 40 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 899,438 | 0 | A | C | 57.1% | 11.0 / 15.5 | 14 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 57.1% | 10.8 / 24.4 | 21 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 2,367,400 | 0 | A | C | 56.7% | 20.0 / 29.2 | 31 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 56.2% | 13.3 / 18.5 | 16 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |
| * | NZ_CP009273 | 2,380,342 | 0 | C | A | 56.2% | 8.6 / 20.3 | 16 | intergenic (+32/‑71) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 546,689 | 0 | T | G | 55.2% | 30.3 / 35.9 | 30 | S265R (AGT→AGG) | ybcF | carbamate kinase |
| * | NZ_CP009273 | 4,475,282 | 0 | T | G | 55.2% | 29.6 / 35.6 | 29 | T163P (ACC→CCC) | pepA | leucyl aminopeptidase |
| * | NZ_CP009273 | 1,152,731 | 0 | T | A | 54.5% | 3.4 / 10.3 | 11 | L167I (TTA→ATA) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 1,429,984 | 0 | G | A | 54.5% | ‑2.0 / 11.4 | 11 | intergenic (‑108/+33) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 3,199,803 | 0 | T | A | 54.5% | 12.3 / 31.1 | 22 | intergenic (‑188/‑19) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,341,237 | 0 | T | G | 54.2% | 21.5 / 25.2 | 24 | V255G (GTG→GGG) | rapZ | RNase adapter RapZ |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 53.8% | 30.4 / 66.0 | 39 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 546,692 | 0 | T | G | 53.3% | 35.2 / 38.6 | 30 | G266G (GGT→GGG) | ybcF | carbamate kinase |
| * | NZ_CP009273 | 711,081 | 0 | A | C | 52.6% | 18.3 / 26.5 | 19 | T72P (ACC→CCC) | BW25113_RS03560 | lipoprotein |
| * | NZ_CP009273 | 984,360 | 0 | T | G | 52.6% | 21.8 / 25.1 | 19 | T28P (ACC→CCC) | asnS | asparagine‑‑tRNA ligase |