mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 281 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 61.9% | ‑6.0 / 21.6 | 21 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 58.0% | 20.4 / 123.5 | 100 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 56.3% | 64.6 / 158.7 | 87 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 55.0% | 8.1 / 22.2 | 20 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 55.0% | 42.6 / 136.7 | 100 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.7% | 24.5 / 67.7 | 53 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 54.4% | 28.7 / 65.0 | 47 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 54.2% | 4.0 / 32.8 | 24 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 54.0% | 36.1 / 55.2 | 37 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 2,360,810 | 0 | A | G | 53.1% | 34.7 / 49.9 | 32 | G87G (GGA→GGG) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 52.4% | 90.0 / 126.6 | 86 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 51.6% | 35.8 / 45.2 | 31 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 51.6% | 37.4 / 45.3 | 31 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,371,314 | 0 | G | A | 47.2% | 22.6 / 19.4 | 36 | F475F (TTC→TTT) | menD | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 46.9% | 65.3 / 10.4 | 49 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 46.8% | 72.4 / 31.1 | 62 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 46.2% | 75.3 / 10.5 | 52 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 46.0% | 60.8 / 23.5 | 50 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 46.0% | 66.2 / 16.1 | 50 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 45.6% | 51.2 / 28.3 | 57 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4048248 | 106 (1.390) | 3 (0.040) | 3/162 | 4.4 | 2.9% | coding (391/1410 nt) | glnG | nitrogen regulation protein NR(I) |
| ? | NZ_CP009273 | 4048254 = | 101 (1.360) | coding (385/1410 nt) | glnG | nitrogen regulation protein NR(I) | |||||