mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP012306 | 1,091,992 | 0 | T | G | 41.7% | 380.4 / 85.8 | 241 | intergenic (+38/‑145) | narI/ychS | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/predicted protein |
| * | AP012306 | 1,309,914 | 0 | A | C | 36.0% | 197.1 / 28.8 | 114 | L23F (TTA→TTC) | lsrC | AI2 transporter |
| * | AP012306 | 1,944,288 | 0 | A | C | 34.3% | 408.4 / 57.4 | 216 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑CoA ligase |
| * | AP012306 | 341,377 | 0 | T | G | 32.2% | 209.9 / 21.7 | 121 | G60G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| * | AP012306 | 3,527,368 | 0 | A | C | 29.6% | 1082.6 / 98.7 | 469 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator, L‑rhamnose‑binding |
| * | AP012306 | 644,417 | 0 | G | A | 28.9% | 827.0 / inf | 505 | intergenic (+32/‑401) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| * | AP012306 | 800,675 | 0 | A | C | 28.6% | 480.7 / 37.2 | 217 | T192P (ACC→CCC) | lolA | chaperone for lipoproteins |
| * | AP012306 | 3,182,861 | 0 | A | C | 26.9% | 286.9 / 28.1 | 119 | L198F (TTA→TTC) | yiaN | predicted transporter |
| * | AP012306 | 2,758,909 | 0 | T | G | 26.3% | 570.1 / 15.6 | 225 | G33G (GGT→GGG) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| * | AP012306 | 935,054 | 0 | G | T | 26.0% | 192.2 / 30.7 | 73 | intergenic (+24/‑1406) | putP/ycdO | proline:sodium symporter/conserved protein |
| * | AP012306 | 202,417 | 0 | T | G | 25.8% | 522.5 / 34.3 | 230 | V409G (GTA→GGA) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | AP012306 | 3,282,076 | 0 | T | G | 25.7% | 495.7 / 21.3 | 227 | intergenic (‑79/+27) | ilvB/ivbL | acetolactate synthase I, large subunit/ilvB operon leader peptide |
| * | AP012306 | 1,854,851 | 0 | A | C | 24.8% | 622.3 / 61.4 | 247 | T25P (ACC→CCC) | yejH | predicted ATP‑dependet helicase |
| * | AP012306 | 3,645,642 | 0 | A | C | 24.5% | 837.0 / 29.4 | 326 | T318P (ACC→CCC) | aceB | malate synthase A |
| * | AP012306 | 2,376,612 | 0 | T | G | 23.9% | 449.4 / 26.0 | 180 | V326G (GTA→GGA) | ygbN | predicted transporter |
| * | AP012306 | 1,128,412 | 0 | T | G | 23.7% | 672.7 / 49.1 | 266 | V29G (GTG→GGG) | yciO | conserved protein |
| * | AP012306 | 2,560,243 | 0 | T | G | 23.7% | 401.6 / 21.3 | 169 | N419T (AAC→ACC) | pepP | proline aminopeptidase P II |
| * | AP012306 | 3,938,887 | 0 | C | T | 23.5% | 569.8 / 116.6 | 243 | S44F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator |
| * | AP012306 | 2,714,555 | 0 | T | G | 23.4% | 700.1 / 11.2 | 278 | T175P (ACC→CCC) | ygjV | conserved inner membrane protein |
| * | AP012306 | 3,639,040 | 0 | T | G | 23.4% | 180.0 / 11.8 | 77 | noncoding (54/76 nt) | gltV | tRNA‑Glu |
| Marginal new junction evidence (lowest skew 10 of 103 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | = 214776 | NA (NA) | 9 (0.030) | 9/282 | 12.6 | NA | noncoding (157/2905 nt) | rrlH | 23S ribosomal RNA (rrlH) |
| ? | AP012306 | = 214787 | NA (NA) | noncoding (168/2905 nt) | rrlH | 23S ribosomal RNA (rrlH) | |||||
| * | ? | AP012306 | = 2273984 | NA (NA) | 9 (0.030) | 9/296 | 12.8 | NA | noncoding (828/2904 nt) | rrlG | 23S ribosomal RNA (rrlG) |
| ? | AP012306 | = 2274011 | NA (NA) | noncoding (801/2904 nt) | rrlG | 23S ribosomal RNA (rrlG) | |||||
| * | ? | AP012306 | = 214040 | NA (NA) | 9 (0.030) | 8/292 | 13.1 | NA | noncoding (1409/1542 nt) | rrsH | 16S ribosomal RNA (rrsH) |
| ? | AP012306 | = 214049 | NA (NA) | noncoding (1418/1542 nt) | rrsH | 16S ribosomal RNA (rrsH) | |||||
| * | ? | AP012306 | 3435131 = | 542 (1.730) | 7 (0.020) | 7/288 | 13.4 | 1.3% | coding (55/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | AP012306 | 3435156 = | 532 (1.760) | coding (80/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | AP012306 | 3396977 = | 832 (2.650) | 7 (0.020) | 7/284 | 13.4 | 0.89% | intergenic (+88/‑152) | rho/rfe | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | AP012306 | 3396992 = | 771 (2.580) | intergenic (+103/‑137) | rho/rfe | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | AP012306 | = 213957 | NA (NA) | 9 (0.030) | 7/288 | 13.4 | NA | noncoding (1326/1542 nt) | rrsH | 16S ribosomal RNA (rrsH) |
| ? | AP012306 | = 213963 | NA (NA) | noncoding (1332/1542 nt) | rrsH | 16S ribosomal RNA (rrsH) | |||||
| * | ? | AP012306 | 3597785 = | 801 (2.550) | 22 (0.070) | 7/296 | 13.6 | 2.7% | intergenic (+125/‑69) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA (rrlB) |
| ? | AP012306 | 3597808 = | NA (NA) | intergenic (+148/‑46) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA (rrlB) | |||||
| * | ? | AP012306 | = 3530598 | 637 (2.030) | 6 (0.020) | 6/286 | 13.8 | 0.91% | coding (576/621 nt) | sodA | superoxide dismutase, Mn |
| ? | AP012306 | = 3530620 | 691 (2.300) | coding (598/621 nt) | sodA | superoxide dismutase, Mn | |||||
| * | ? | AP012306 | 3474103 = | 938 (2.990) | 7 (0.020) | 6/286 | 13.8 | 0.78% | coding (692/1431 nt) | yihF | conserved protein |
| ? | AP012306 | 3474116 = | 887 (2.950) | coding (705/1431 nt) | yihF | conserved protein | |||||
| * | ? | AP012306 | = 3278829 | 200 (0.640) | 6 (0.020) | 6/292 | 13.9 | 3.0% | coding (521/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| ? | AP012306 | = 3278859 | 188 (0.610) | coding (491/1503 nt) | uhpB | sensory histidine kinase in two‑component regulatory sytem with UhpA | |||||