breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 1,806,746 G→C W15C (TGG→TGC)  yeiG → S‑formylglutathione hydrolase YeiG
RA 3,957,251 G→A P133L (CCG→CTG)  dmlR_13 ← HTH‑type transcriptional regulator DmlR
JC 4,257,352 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
RA 5,533,095 G→A R132C (CGC→TGC)  CJ019_05210 ← hypothetical protein
RA 5,756,060 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB122 517195 517295 101 20 [14] [16] 19 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ ACB122 674245 674397 153 18 [15] [17] 18 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ ACB122 1119623 1119715 93 19 [17] [13] 26 tdcG_2/gcvP_1 L‑serine dehydratase TdcG/Glycine dehydrogenase (decarboxylating)
* * ÷ ACB122 1396595 1396684 90 18 [16] [17] 18 [mcpU_1] [mcpU_1]
* * ÷ ACB122 1492450 1492612 163 19 [16] [16] 19 [CJ019_01406] [CJ019_01406]
* * ÷ ACB122 1585606 1585713 108 18 [16] [17] 19 CJ019_01493 hypothetical protein
* * ÷ ACB122 1632581 1632689 109 18 [16] [16] 18 czcR_4/CJ019_01536 Transcriptional activator protein CzcR/hypothetical protein
* * ÷ ACB122 3769375 3769472 98 18 [17] [15] 21 [CJ019_03581] [CJ019_03581]
* * ÷ ACB122 4163779 4163886 108 21 [15] [17] 18 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ ACB122 4521575 4521703 129 19 [16] [17] 20 [CJ019_04289] [CJ019_04289]
* * ÷ ACB122 4666872 4667002 131 18 [14] [15] 18 [btuB_4] [btuB_4]
* * ÷ ACB122 4732421 4732514 94 20 [15] [17] 18 [CJ019_04468] [CJ019_04468]
* * ÷ ACB122 4801832 4802239 408 19 [17] [16] 18 CJ019_04509/dsbD_2 hypothetical protein/Thiol:disulfide interchange protein DsbD
* * ÷ ACB122 4846353 4846455 103 18 [17] [15] 19 recR/ybaB Recombination protein RecR/Nucleoid‑associated protein YbaB
* * ÷ ACB122 4933622 4982636 49015 71 [0] [4] 54 [CJ019_04628]–[ycaD_3] [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3]
* * ÷ ACB122 5499098 5499288 191 18 [17] [15] 18 [CJ019_05176] [CJ019_05176]
* * ÷ ACB122 5895754 5895871 118 18 [17] [17] 18 [CJ019_05521] [CJ019_05521]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? ACB122 3359608 =32 (0.590)49 (0.920) 29/256 0.5 73.4% intergenic (+217/‑153) pikAII_1/CJ019_03160 Narbonolide/10‑deoxymethynolide synthase PikA2,modules 3 and 4/Tn3 family transposase ISPa42
?ACB122 4982637 = 4 (0.070)coding (1090/1335 nt) ycaD_3 putative MFS‑type transporter YcaD
* ? ACB122 = 337662450 (0.920)70 (1.320) 36/254 0.2 74.1% coding (499/546 nt) CJ019_03184 hypothetical protein
?ACB122 = 4933621 0 (0.000)coding (222/1041 nt) CJ019_04628 hypothetical protein