mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 608 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 580,512 | 0 | A | G | 74.7% | 41.8 / 133.2 | 194 | K152K (AAA→AAG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,422 | 0 | A | C | 72.4% | 78.4 / 85.0 | 116 | A122A (GCA→GCC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,026 | 0 | T | G | 70.8% | 78.7 / 72.0 | 89 | A122A (GCA→GCC) | nohA | NohA |
| * | NC_000913 | 580,419 | 0 | C | G | 70.7% | 108.9 / 128.6 | 140 | I121M (ATC→ATG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,513 | 0 | C | A | 70.4% | 116.8 / 212.7 | 206 | R153R (CGG→AGG) ‡ | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,773 | 0 | G | A | 68.8% | 1334.9 / inf | 876 | S66N (AGC→AAC) | ybcX | hypothetical protein |
| * | NC_000913 | 1,949,472 | 0 | G | T | 68.5% | 478.2 / inf | 467 | G18G (GGG→GGT) | yecE | hypothetical protein |
| * | NC_000913 | 580,798 | 0 | G | T | 68.4% | 903.7 / inf | 812 | V74V (GTG→GTT) | ybcX | hypothetical protein |
| * | NC_000913 | 580,514 | 0 | G | A | 68.4% | 105.3 / 185.1 | 212 | R153Q (CGG→CAG) ‡ | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,771 | 0 | C | T | 68.3% | 1217.4 / inf | 876 | G65G (GGC→GGT) | ybcX | hypothetical protein |
| * | NC_000913 | 580,795 | 0 | T | C | 68.2% | 1050.9 / inf | 837 | N73N (AAT→AAC) | ybcX | hypothetical protein |
| * | NC_000913 | 580,801 | 0 | G | T | 68.1% | 946.1 / inf | 813 | V75V (GTG→GTT) | ybcX | hypothetical protein |
| * | NC_000913 | 1,634,029 | 0 | G | C | 68.1% | 89.4 / 96.8 | 94 | I121M (ATC→ATG) | nohA | NohA |
| * | NC_000913 | 580,777 | 0 | C | T | 68.1% | 1309.7 / inf | 878 | D67D (GAC→GAT) | ybcX | hypothetical protein |
| * | NC_000913 | 580,783 | 0 | C | A | 68.0% | 945.6 / inf | 895 | I69I (ATC→ATA) | ybcX | hypothetical protein |
| * | NC_000913 | 580,750 | 0 | G | C | 67.9% | 1247.5 / inf | 831 | R58R (CGG→CGC) | ybcX | hypothetical protein |
| * | NC_000913 | 580,792 | 0 | G | C | 67.7% | 1251.8 / inf | 850 | V72V (GTG→GTC) | ybcX | hypothetical protein |
| * | NC_000913 | 580,747 | 0 | G | A | 67.3% | 1127.9 / inf | 834 | Q57Q (CAG→CAA) | ybcX | hypothetical protein |
| * | NC_000913 | 580,753 | 0 | C | G | 67.1% | 1105.6 / inf | 796 | A59A (GCC→GCG) | ybcX | hypothetical protein |
| * | NC_000913 | 580,524 | 0 | C | T | 66.5% | 130.4 / 206.9 | 219 | I156I (ATC→ATT) | nohB | bacteriophage DNA packaging protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207013 = | 76 (0.320) | 87 (0.450) | 61/152 | 3.5 | 55.1% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 79 (0.410) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 4008398 | 53 (0.230) | 56 (0.250) +AAGA |
25/172 | 13.2 | 52.2% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 53 (0.230) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| * | ? | NC_000913 | 4540250 = | 76 (0.320) | 6 (0.030) | 6/166 | 22.2 | 4.8% | intergenic (+49/‑433) | fimE/fimA | FimE/major type 1 subunit fimbrin |
| ? | NC_000913 | 4540564 = | 167 (0.790) | intergenic (+363/‑119) | fimE/fimA | FimE/major type 1 subunit fimbrin | |||||
| * | ? | NC_000913 | 3771651 = | 308 (1.320) | 3 (0.010) | 3/168 | 24.9 | 1.1% | coding (1744/1914 nt) | mtlA | PTS system, mannitol‑specific enzyme IIABC components |
| ? | NC_000913 | = 3771647 | 282 (1.320) | coding (1740/1914 nt) | mtlA | PTS system, mannitol‑specific enzyme IIABC components | |||||
| * | ? | NC_000913 | 224928 = | NA (NA) | 3 (0.010) | 3/182 | 25.8 | NA | noncoding (1158/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | 224949 = | NA (NA) | noncoding (1179/1542 nt) | rrsH | 16S ribosomal RNA | |||||