mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BA000036 | 1,175,388 | 0 | T | G | 27.9% | 364.1 / 28.2 | 140 | N295T (AAC→ACC) | Cgl1129 | Pyruvate and 2‑oxoglutarate dehydrogenases, E1 component |
| * | BA000036 | 1,175,384 | 0 | T | C | 23.2% | 341.8 / 30.2 | 142 | P296P (CCA→CCG) | Cgl1129 | Pyruvate and 2‑oxoglutarate dehydrogenases, E1 component |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BA000036 | 1 = | 0 (0.000) | 102 (0.510) | 85/496 | 5.0 | 100% | coding (1/1575 nt) | Cgl0001 | ATPase involved in DNA replication initiation |
| ? | BA000036 | = 3309401 | 0 (0.000) | intergenic (‑653/–) | Cgl3099/– | Ribosomal protein L34/– | |||||
| * | ? | BA000036 | = 1776694 | 0 (0.000) | 74 (0.430) | 64/426 | 6.3 | 100% | intergenic (+10/+1405) | codon recognized:GTG/Cgl1675 | tRNA‑Val/Hypothetical protein |
| ? | BA000036 | 1986950 = | 0 (0.000) | intergenic (‑360/+554) | Cgl1881/Cgl1882 | Integrase/Putative transposase | |||||