breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 433,653 | T→G | F50V (TTT→GTT) | hupB → | HU, DNA‑binding transcriptional regulator, beta subunit |
RA | 1,081,210 | (T)8→7 | coding (885/1260 nt) | yccE → | hypothetical protein |
RA | 1,126,975 | T→C | L515P (CTG→CCG) | mdoH → | glucosyltransferase MdoH |
RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
RA | 1,689,712 | (C)6→7 | intergenic (+360/‑251) | nth → / → ydgR | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease |
JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
JC JC | 1,886,669 | IS1 (–) +9 bp | intergenic (‑499/+162) | yobF ← / ← yebO | hypothetical protein/hypothetical protein |
RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
RA | 4,162,470 | A→C | T539P (ACC→CCC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
RA | 4,163,752 | T→G | I966S (ATC→AGC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
RA | 4,193,694 | G→T | intergenic (‑126/‑31) | yjaB ← / → metA | predicted acetyltransferase/homoserine O‑succinyltransferase |
JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 1607980–1609176 | 1609746 | 571–1767 | 14 [12] | [12] 13 | [insE‑3]–ybcW | [insE‑3],insF‑3,ybcW |
* | * | ÷ | REL606 | 1610064 | 1614190 | 4127 | 13 [12] | [12] 14 | ynfN–[ECB_01522] | ynfN,ECB_01516,cspI,ydfP,ydfQ,ydfR,essQ,[ECB_01522] |
* | * | ÷ | REL606 | 1614469 | 1616663–1615471 | 1003–2195 | 13 [12] | [12] 13 | ECB_01523–[insF‑4] | ECB_01523,insE‑4,[insF‑4] |
* | * | ÷ | REL606 | 2031582–2031671 | 2032989 | 1319–1408 | 16 [12] | [12] 13 | [manB]–[manC] | [manB],[manC] |
* | * | ÷ | REL606 | 2035963 | 2038569 | 2607 | 13 [12] | [12] 13 | [wbbC]–[wbbB] | [wbbC],wzy,[wbbB] |
* | * | ÷ | REL606 | 2038575 | 2039520 | 946 | 13 [12] | [12] 13 | [wbbB]–[wbbA] | [wbbB],[wbbA] |
* | * | ÷ | REL606 | 2039819 | 2041437 | 1619 | 13 [12] | [12] 13 | [vioB]–[wzx] | [vioB],vioA,[wzx] |
* | * | ÷ | REL606 | 2042975 | 2052771 | 9797 | 13 [12] | [12] 13 | [rmlC]–[wzxC] | [rmlC],rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,[wzxC] |
* | * | ÷ | REL606 | 2052777 | 2054858–2054826 | 2050–2082 | 13 [12] | [12] 14 | [wzxC]–[cpsG] | [wzxC],wcaJ,[cpsG] |