breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 474,455 | A→G | L284P (CTG→CCG) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
JC JC | 1,305,487 | IS150 (–) +3 bp | coding (751‑753/1461 nt) | cls ← | cardiolipin synthetase |
RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
RA | 2,619,387 | C→A | intergenic (‑5/+20) | tadA ← / ← yfhB | tRNA‑specific adenosine deaminase/hypothetical protein |
RA | 2,625,089 | G→T | P156Q (CCG→CAG) | rncS ← | ribonuclease III |
RA | 3,247,298 | A→G | D238D (GAT→GAC) | truB ← | tRNA pseudouridine synthase B |
RA | 3,259,207 | G→A | A33V (GCG→GTG) | glmM ← | phosphoglucosamine mutase |
RA | 3,465,147 | T→A | D41V (GAT→GTT) | ompR ← | osmolarity response regulator |
RA | 3,497,971 | G→A | A22V (GCT→GTT) | glgP ← | glycogen phosphorylase |
RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
RA | 3,928,947 | A→G | E244G (GAA→GGA) | rho → | transcription termination factor Rho |
RA | 4,097,224 | G→A | Q117* (CAG→TAG) | glpF ← | glycerol facilitator |
RA | 4,162,569 | A→T | I572F (ATC→TTC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
MC JC | 4,201,809 | Δ3,666 bp | [iclR]–[metH] | [iclR], [metH] | |
JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 711405 | 711526 | 122 | 14 [12] | [12] 13 | [ybfA] | [ybfA] |