breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 433,771 | 2 bp→AC | coding (266‑267/273 nt) | hupB → | HU, DNA‑binding transcriptional regulator, beta subunit |
RA | 783,391 | G→A | G292G (GGG→GGA) | ybhI → | predicted transporter |
RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
JC JC | 3,013,368 | IS150 (–) +3 bp | intergenic (+32/‑50) | ECB_02814 → / → ECB_02815 | conserved hypothetical protein/Capsule polysaccharide export inner‑membrane protein kpsE |
RA | 3,145,822 | C→A | intergenic (+153/‑42) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
RA | 3,328,101 | A→G | L293P (CTC→CCC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
RA | 3,346,924 | G→A | intergenic (+422/‑117) | yhdV → / → yhdW | predicted outer membrane protein/predicted amino‑acid transporter subunit |
RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
RA | 4,164,097 | C→T | P1081L (CCG→CTG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
JC | 4,347,649 | Δ42 bp | coding (265‑306/477 nt) | fxsA → | inner membrane protein |
JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |