mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4502104 | 167 (1.100) | 2 (0.010) | 4/542 | NT | 1.2% | noncoding (1412/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | = 4502108 | 168 (1.150) | noncoding (1408/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 4404332 | 145 (0.950) | 4 (0.030) | 4/558 | NT | 2.6% | intergenic (+28/‑54) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein |
| ? | NC_000913 | = 4404361 | 152 (1.010) | intergenic (+57/‑25) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein | |||||
| * | ? | NC_000913 | = 4281821 | 164 (1.080) | 3 (0.020) | 3/544 | NT | 1.8% | coding (1255/1293 nt) | yjcF | pentapeptide repeats protein |
| ? | NC_000913 | = 4281830 | 167 (1.140) | coding (1246/1293 nt) | yjcF | pentapeptide repeats protein | |||||
| * | ? | NC_000913 | = 4200155 | 156 (1.030) | 3 (0.020) | 3/542 | NT | 1.9% | intergenic (+61/‑126) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | = 4200170 | 154 (1.050) | intergenic (+76/‑111) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | NC_000913 | = 4199236 | 138 (0.910) | 3 (0.020) | 3/548 | NT | 2.2% | coding (447/672 nt) | nfi | endonuclease V; deoxyinosine 3' endonuclease |
| ? | NC_000913 | = 4199337 | 131 (0.890) | coding (548/672 nt) | nfi | endonuclease V; deoxyinosine 3' endonuclease | |||||
| * | ? | NC_000913 | = 2771960 | 165 (1.090) | 4 (0.030) | 4/548 | NT | 2.4% | intergenic (+345/+42) | yfjT/yfjU | CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related |
| ? | NC_000913 | = 2771971 | 168 (1.140) | intergenic (+356/+31) | yfjT/yfjU | CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2716029 | 155 (1.020) | 2 (0.010) | 3/540 | NT | 1.3% | intergenic (+19/+37) | eamB/grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| ? | NC_000913 | = 2716033 | 153 (1.050) | intergenic (+23/+33) | eamB/grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor | |||||
| * | ? | NC_000913 | = 2713829 | 142 (0.930) | 3 (0.020) | 3/542 | NT | 2.2% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 134 (0.920) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 2062567 = | 142 (0.930) | 3 (0.020) | 3/550 | NT | 2.1% | coding (757/933 nt) | ldtA | L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | 2062600 = | 139 (0.940) | coding (724/933 nt) | ldtA | L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913 | = 1770191 | 165 (1.090) | 5 (0.030) | 5/564 | NT | 2.9% | intergenic (+5/‑181) | ydiK/rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| ? | NC_000913 | = 1770216 | 170 (1.120) | intergenic (+30/‑156) | ydiK/rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent | |||||