mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 431,505 | T→C | 12.1% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 574,305 | G→A | 17.7% | G602D (GGT→GAT) | SAS0501 → | DNA‑directed RNA polymerase beta' chain protein |
| RA | BX571857 | 697,673 | G→T | 92.5% | A121S (GCT→TCT) | SAS0619 → | putative membrane protein |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| JC | BX571857 | 1,332,858 | 28 bp→28 bp | 17.2% | coding (187‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,937,435 | A→G | 5.5% | noncoding (62/90 nt) | tRNA Ser anticodon TGA_ Cove score 61.04 ← | tRNA‑Ser |
| RA | BX571857 | 2,115,959 | T→C | 6.4% | intergenic (+122/+345) | SAS1966 → / ← unknown | threonine dehydratase biosynthetic/– |
| RA | BX571857 | 2,485,521 | C→T | 21.8% | T209I (ACC→ATC) | SAS2324 → | putative glycerate kinase |
| RA | BX571857 | 2,700,209 | A→G | 5.4% | D753D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571857 | 2,727,708 | G→A | 5.8% | T430I (ACC→ATC) | SAS2534 ← | hypothetical protein |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 144 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 17 (0.180) | 16/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 127 (1.150) | 75/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||