mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,993,814 | 0 | G | A | 52.8% | ‑0.1 / 47.9 | 36 | intergenic (+103/‑443) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,993,916 | 0 | A | C | 52.8% | 3.8 / 44.2 | 36 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 1,332,076 | 0 | C | T | 52.6% | 8.3 / 52.3 | 38 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,353,698 | 0 | A | G | 47.5% | 15.7 / 55.2 | 40 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 3,452,278 | 0 | A | C | 46.4% | 8.9 / 22.2 | 61 | S18R (AGC→CGC) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 699,725 | 0 | A | G | 44.4% | 5.3 / 20.6 | 18 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 2,092,443 | 0 | G | A | 43.8% | 20.1 / 30.8 | 32 | intergenic (+264/+654) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,092,445 | 0 | T | G | 43.8% | 9.4 / 42.1 | 32 | intergenic (+266/+652) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 2,092,447 | 0 | A | C | 43.8% | 8.5 / 36.9 | 32 | intergenic (+268/+650) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| * | NC_002947 | 3,638,041 | 0 | T | G | 40.0% | 71.1 / 19.0 | 70 | V174G (GTG→GGG) | PP_3201 | BNR domain‑containing protein |
| * | NC_002947 | 1,752,342 | 0 | T | G | 38.0% | 30.1 / 17.6 | 51 | E53A (GAG→GCG) | PP_5473 | LuxR family transcriptional regulator |
| * | NC_002947 | 544,106 | 0 | G | A | 37.5% | 9.2 / 12.5 | 16 | K781K (AAG→AAA) | rpoC | DNA‑directed RNA polymerase subunit beta' |
| * | NC_002947 | 3,452,298 | 0 | A | C | 35.7% | 62.5 / 12.6 | 56 | A24A (GCA→GCC) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 4,011,292 | 0 | T | G | 35.7% | 64.9 / 10.3 | 48 | Q526P (CAG→CCG) | PP_3535 | gamma‑glutamyltransferase |
| * | NC_002947 | 5,993,808 | 0 | G | . | 31.8% | 149.2 / 73.3 | 77 | intergenic (+97/‑449) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 1,782,512 | 0 | A | C | 31.6% | 100.5 / 13.8 | 57 | intergenic (+255/+37) | PP_5476/PP_1585 | hypothetical protein/antidote protein |
| * | NC_002947 | 1,371,603 | 0 | A | G | 30.4% | 66.7 / 18.3 | 46 | S18P (TCC→CCC) | PP_1191 | S4 domain‑containing protein |
| * | NC_002947 | 1,622,773 | 0 | C | G | 27.3% | 36.8 / 15.8 | 22 | intergenic (‑37/+136) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | NC_002947 | 195,634 | 0 | C | T | 26.1% | 35.1 / 11.2 | 24 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 6,075,165 | 0 | A | C | 26.0% | 149.7 / 11.8 | 77 | V162G (GTG→GGG) | PP_5324 | two‑component system response regulator |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2109155 = | 14 (0.580) | 3 (0.130) | 3/252 | 1.8 | 16.5% | coding (721/1515 nt) | PP_1879 | hypothetical protein |
| ? | NC_002947 | 5613493 = | 17 (0.740) | coding (1105/1272 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic acid transferase | |||||