mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 50 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,130,191 | 0 | C | A | 57.1% | 3.6 / 11.9 | 14 | intergenic (‑240/+64) | gcvH‑I/PP_0990 | glycine cleavage system protein H/DoxX family protein |
| * | NC_002947 | 196,351 | 0 | C | G | 52.0% | ‑5.1 / 38.9 | 25 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 3,449,251 | 0 | A | C | 50.9% | ‑6.6 / 26.4 | 56 | S18R (AGC→CGC) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 4,160,429 | 0 | C | G | 50.0% | ‑3.6 / 16.3 | 26 | A158G (GCG→GGG) | PP_3661 | membrane protein |
| * | NC_002947 | 4,350,671 | 0 | A | G | 49.3% | 19.3 / 107.6 | 70 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 1,148,793 | 0 | A | C | 47.8% | ‑5.3 / 10.3 | 23 | V153G (GTC→GGC) | PP_1007 | transmembrane sensor |
| * | NC_002947 | 5,990,889 | 0 | A | C | 46.8% | 7.7 / 82.7 | 65 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 196,390 | 0 | T | C | 46.2% | ‑0.1 / 32.2 | 27 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,511,878 | 0 | T | G | 44.1% | ‑1.4 / 10.7 | 36 | L36R (CTC→CGC) | urtB | urea ABC transporter permease |
| * | NC_002947 | 3,449,275 | 0 | T | G | 43.8% | 33.4 / 15.9 | 54 | W26G (TGG→GGG) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 3,449,256 | 0 | T | G | 43.1% | 16.3 / 18.5 | 58 | A19A (GCT→GCG) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 196,306 | 0 | T | C | 42.9% | ‑0.8 / 23.4 | 21 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,990,883 | 0 | T | C | 42.5% | 6.4 / 49.8 | 40 | intergenic (+199/‑347) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 1,327,127 | 0 | C | T | 41.8% | 48.7 / 62.2 | 55 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 196,327 | 0 | A | C | 40.7% | 1.6 / 36.3 | 27 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 3,793,571 | 0 | T | G | 39.5% | 16.5 / 11.3 | 43 | D571A (GAC→GCC) | PP_3354 | acyl‑CoA dehydrogenase |
| * | NC_002947 | 1,590,985 | 0 | G | T | 38.1% | 64.3 / 10.3 | 42 | intergenic (+94/+30) | PP_1394/PP_1395 | acetolactate synthase large subunit/AraC family transcriptional regulator |
| * | NC_002947 | 699,725 | 0 | A | G | 37.5% | 9.1 / 13.6 | 16 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 3,449,271 | 0 | A | C | 37.5% | 36.1 / 12.3 | 56 | A24A (GCA→GCC) | PP_5556 | bacteriophage lysis protein |
| * | NC_002947 | 1,534,609 | 0 | C | A | 36.2% | 117.2 / 19.1 | 71 | R860S (CGC→AGC) | secA | protein translocase subunit SecA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5990749 | 106 (2.360) | 11 (0.260) | 8/248 | 1.5 | 11.9% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947 | 5990941 = | 63 (1.500) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 5990735 | 103 (2.300) | 5 (0.120) | 4/248 | 2.3 | 5.9% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947 | 5990957 = | 63 (1.500) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 2416432 = | 55 (1.230) | 3 (0.070) | 3/242 | 2.5 | 5.6% | intergenic (+9/‑336) | PP_2114/PP_2115 | transposase/hypothetical protein |
| ? | NC_002947 | 2532566 = | NA (NA) | intergenic (+20/‑161) | PP_2218/PP_2219 | transposase/hypothetical protein | |||||
| * | ? | NC_002947 | 3314135 = | 47 (1.050) | 3 (0.070) | 3/262 | 2.6 | 6.3% | coding (405/894 nt) | PP_2912 | hypothetical protein |
| ? | NC_002947 | = 4151571 | 42 (0.940) | coding (57/453 nt) | PP_3654 | leucine‑responsive regulatory protein | |||||