mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,728,183 | 0 | C | G | 64.3% | ‑5.9 / 15.5 | 15 | A397P (GCG→CCG) | xylB | xylulokinase |
| * | NC_000913 | 2,253,023 | 0 | C | G | 55.6% | 2.3 / 26.7 | 18 | A375P (GCG→CCG) | nupX | nucleoside permease |
| * | NC_000913 | 1,135,975 | 0 | G | C | 40.0% | 31.8 / 23.3 | 30 | A138P (GCC→CCC) | flgH | flagellar protein of basal‑body outer‑membrane L ring |
| * | NC_000913 | 2,253,024 | 0 | C | G | 38.9% | 14.6 / 10.5 | 18 | G374G (GGG→GGC) | nupX | nucleoside permease |
| * | NC_000913 | 1,984,188 | 0 | C | G | 37.5% | 25.5 / 15.6 | 24 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| * | NC_000913 | 3,107,154 | 0 | C | G | 37.5% | 15.3 / 10.8 | 18 | A668P (GCG→CCG) | speC | ornithine decarboxylase, constitutive |
| * | NC_000913 | 1,747,168 | 0 | G | T | 35.7% | 45.5 / 10.4 | 28 | G13V (GGG→GTG) | ydhS | putative oxidoreductase |
| * | NC_000913 | 3,641,407 | 0 | G | C | 32.3% | 47.0 / 12.2 | 31 | G182G (GGG→GGC) | dtpB | dipeptide and tripeptide permease B |
| * | NC_000913 | 516,893 | 0 | G | C | 32.1% | 51.6 / 12.0 | 28 | G104A (GGA→GCA) | fetB | iron export ABC transporter permease; peroxide resistance protein |
| * | NC_000913 | 3,499,705 | 0 | C | G | 32.1% | 53.9 / 11.4 | 30 | intergenic (+90/‑205) | yhfL/frlA | small lipoprotein/putative fructoselysine transporter |
| * | NC_000913 | 1,527,602 | 0 | G | C | 28.1% | 60.7 / 11.7 | 33 | intergenic (+450/‑300) | yncH/rhsE | IPR020099 family protein/pseudogene, Rhs family |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.1% | 76.1 / 32.9 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,035,587 | 0 | C | G | 26.5% | 49.8 / 10.6 | 35 | intergenic (+344/‑248) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone |
| * | NC_000913 | 1,041,386 | 0 | G | C | 26.1% | 29.3 / 12.0 | 23 | G257A (GGA→GCA) | appA | phosphoanhydride phosphorylase |
| * | NC_000913 | 669,840 | 0 | G | C | 23.6% | 117.8 / 19.3 | 57 | A23G (GCG→GGG) | cobC | putative alpha‑ribazole‑5'‑P phosphatase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3578118 | 57 (2.010) | 3 (0.120) | 3/116 | 2.2 | 7.4% | coding (609/996 nt) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| ? | NC_000913 | = 3578182 | 25 (1.010) | coding (545/996 nt) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor | |||||
| * | ? | NC_000913 | = 1843605 | 19 (0.670) | 3 (0.120) | 3/114 | 2.2 | 15.6% | coding (1235/1344 nt) | gdhA | glutamate dehydrogenase, NADP‑specific |
| ? | NC_000913 | = 1843614 | 16 (0.650) | coding (1244/1344 nt) | gdhA | glutamate dehydrogenase, NADP‑specific | |||||
| * | ? | NC_000913 | 1247840 = | 34 (1.200) | 4 (0.160) | 3/118 | 2.2 | 11.9% | coding (1275/1419 nt) | dhaM | putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components |
| ? | NC_000913 | 1247877 = | 29 (1.150) | coding (1238/1419 nt) | dhaM | putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components | |||||