mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,770,232 | 0 | C | G | 63.6% | ‑5.0 / 11.3 | 12 | intergenic (+86/+11) | yibU/yibH | pseudogene, H repeat‑associated protein/putative membrane fusion protein (MFP) component of efflux pump |
| * | NC_000913 | 3,770,231 | 0 | C | G | 58.3% | ‑5.4 / 11.9 | 12 | intergenic (+85/+12) | yibU/yibH | pseudogene, H repeat‑associated protein/putative membrane fusion protein (MFP) component of efflux pump |
| * | NC_000913 | 4,296,060 | 0 | C | T | 47.8% | 7.7 / 64.2 | 47 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,984,188 | 0 | C | G | 42.1% | 18.3 / 14.2 | 19 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| * | NC_000913 | 2,879,536 | 0 | C | G | 39.1% | 32.3 / 10.1 | 25 | G79G (GGG→GGC) | ygbT | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| * | NC_000913 | 2,253,023 | 0 | C | G | 38.1% | 25.1 / 16.2 | 21 | A375P (GCG→CCG) | nupX | nucleoside permease |
| * | NC_000913 | 1,708,805 | 0 | T | A | 35.7% | 22.4 / 10.1 | 30 | R629R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| * | NC_000913 | 1,903,913 | 0 | A | T | 35.0% | 12.3 / 10.3 | 20 | T7S (ACT→TCT) | manZ | mannose‑specific enzyme IID component of PTS |
| * | NC_000913 | 34,508 | 0 | G | C | 34.4% | 56.2 / 16.9 | 32 | G70A (GGA→GCA) | caiF | cai operon transcriptional activator |
| * | NC_000913 | 2,248,382 | 0 | C | G | 27.6% | 42.0 / 10.3 | 33 | A51P (GCA→CCA) | lysP | lysine transporter |
| * | NC_000913 | 3,498,808 | 0 | T | A | 27.3% | 32.1 / 11.5 | 35 | V327V (GTT→GTA) | cysG | fused siroheme synthase 1,3‑dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase |
| * | NC_000913 | 1,041,386 | 0 | G | C | 26.5% | 62.5 / 11.0 | 34 | G257A (GGA→GCA) | appA | phosphoanhydride phosphorylase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4522458 = | 31 (1.200) | 4 (0.180) | 3/112 | 2.0 | 13.3% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4522501 = | 26 (1.190) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 2330390 = | 23 (0.890) | 3 (0.130) | 3/114 | 2.0 | 16.8% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | 2330449 = | 10 (0.450) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | NC_000913 | = 1876123 | 27 (1.050) | 3 (0.130) | 3/114 | 2.0 | 10.0% | coding (451/1182 nt) | yeaN | putative MFS transporter, inner membrane protein |
| ? | NC_000913 | = 1876140 | 31 (1.390) | coding (468/1182 nt) | yeaN | putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913 | = 4140843 | 52 (2.020) | 3 (0.130) | 3/118 | 2.1 | 9.0% | coding (1379/2502 nt) | frwA | putative PTS enzyme: Hpr, enzyme I and II components |
| ? | NC_000913 | = 4143253 | 14 (0.610) | coding (724/1080 nt) | frwC | putative enzyme IIC component of PTS | |||||
| * | ? | NC_000913 | = 4015247 | 13 (0.500) | 3 (0.130) | 3/118 | 2.1 | 18.4% | coding (2195/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| ? | NC_000913 | = 4015259 | 15 (0.650) | coding (2207/2262 nt) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase | |||||
| * | ? | NC_000913 | 3403033 = | 43 (1.670) | 3 (0.120) | 3/124 | 2.1 | 9.2% | coding (300/1941 nt) | csrD | targeting factor for csrBC sRNA degradation |
| ? | NC_000913 | 3403348 = | 19 (0.780) | intergenic (‑16/‑136) | csrD/acuI | targeting factor for csrBC sRNA degradation/putative acryloyl‑CoA reductase | |||||
| * | ? | NC_000913 | 2971179 = | 45 (1.740) | 3 (0.130) | 3/122 | 2.1 | 8.3% | intergenic (+46/‑92) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| ? | NC_000913 | 2971263 = | 25 (1.050) | intergenic (+130/‑8) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein | |||||
| * | ? | NC_000913 | 1458931 = | 14 (0.540) | 3 (0.120) | 3/124 | 2.1 | 17.1% | coding (668/789 nt) | paaG | 1,2‑epoxyphenylacetyl‑CoA isomerase, oxepin‑CoA‑forming |
| ? | NC_000913 | 1458971 = | 16 (0.660) | coding (708/789 nt) | paaG | 1,2‑epoxyphenylacetyl‑CoA isomerase, oxepin‑CoA‑forming | |||||
| * | ? | NC_000913 | 2346241 = | 24 (0.930) | 3 (0.120) | 3/132 | 2.3 | 11.8% | coding (1377/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| ? | NC_000913 | 2346256 = | 21 (0.810) | coding (1392/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit | |||||