mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,522,277 | 0 | A | G | 29.2% | 107.3 / 12.7 | 72 | M84V (ATG→GTG) | yrfG | GMP/IMP nucleotidase |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 45 (0.650) | 21 (0.340) | 18/258 | 3.9 | 30.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 54 (0.880) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 44 (0.640) | 14 (0.230) | 13/258 | 5.4 | 23.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 53 (0.860) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 3248646 | NA (NA) | 7 (0.110) | 7/278 | 8.5 | NA | noncoding (71/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 3248678 | NA (NA) | noncoding (103/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 3938338 | NA (NA) | 9 (0.140) | 6/278 | 9.1 | 19.0% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 40 (0.580) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 2722989 = | NA (NA) | 9 (0.130) | 6/280 | 9.1 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2723011 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 4487769 | 83 (1.200) | 5 (0.080) | 5/272 | 9.5 | 6.0% | intergenic (+12/‑320) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | CP009273 | = 4487771 | 78 (1.200) | intergenic (+14/‑318) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 1222499 = | 62 (0.900) | 7 (0.110) | 5/274 | 9.6 | 10.9% | intergenic (+75/+28) | ycgJ/pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| ? | CP009273 | 1222518 = | 56 (0.860) | intergenic (+94/+9) | ycgJ/pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme | |||||
| * | ? | CP009273 | 748589 = | 48 (0.690) | 7 (0.110) | 5/274 | 9.6 | 13.6% | intergenic (‑338/+52) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| ? | CP009273 | 748613 = | 44 (0.670) | intergenic (‑362/+28) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 9 (0.140) | 5/278 | 9.7 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223539 | 37 (0.530) | 9 (0.140) | 5/278 | 9.7 | 20.2% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||