mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 684,444 | G→C | T9R (ACA→AGA) | insH1 ← | IS5 transposase and trans‑activator |
| RA | 1,138,811 | T→C | D338G (GAC→GGC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
| RA | 2,346,136 | G→T | R4L (CGC→CTC) | glpA → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
| RA | 2,959,697 | Δ1 bp | coding (2097/2247 nt) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| RA | 3,178,277 | G→T | E27* (GAA→TAA) | yqiC → | BMFP family putative fusogenic protein |
| RA | 4,048,586 | A→T | V18E (GTG→GAG) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| RA | 4,050,841 | G→T | P185Q (CCG→CAG) | glnA ← | glutamine synthetase |
| RA | 4,133,470 | C→T | A338V (GCG→GTG) | frwC → | putative enzyme IIC component of PTS |
| RA | 4,546,084 | G→T | H18Q (CAC→CAA) | yjiC ← | uncharacterized protein |
| RA | 4,596,171 | G→A | noncoding (48/87 nt) | leuQ ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 1836565 | 1838007 | 1443 | 64 [62] | [63] 66 | gdhA | gdhA |
| * | * | ÷ | CP009273 | 3347932 | 3352586 | 4655 | 64 [62] | [63] 64 | gltB–[gltD] | gltB, [gltD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | NA (NA) | 194 (1.620) | 110/296 | 0.0 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1973060 = | 8 (0.070) | 124 (1.030) | 94/296 | 0.1 | 93.9% | intergenic (‑606/‑174) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 1973068 | 6 (0.050) | 105 (0.870) | 75/296 | 0.6 | 94.6% | intergenic (‑614/‑166) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||