mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 52 (0.780) | 15 (0.250) | 13/252 | 4.7 | 26.5% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 37 (0.630) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3423374 = | 85 (1.280) | 8 (0.120) | 7/280 | 7.9 | 8.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423663 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3423374 = | 85 (1.280) | 8 (0.120) | 6/280 | 8.5 | 14.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946821 | 9 (0.140) | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp | |||||
| * | ? | NC_000913 | = 972568 | 77 (1.160) | 5 (0.080) | 5/264 | 8.6 | 6.3% | coding (817/894 nt) | ycbJ | protein kinase‑like domain protein |
| ? | NC_000913 | = 972596 | 76 (1.230) | coding (845/894 nt) | ycbJ | protein kinase‑like domain protein | |||||
| * | ? | NC_000913 | 3423374 = | 85 (1.280) | 11 (0.170) | 5/280 | 9.1 | 12.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213161 | 67 (1.020) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4542691 | 49 (0.740) | 4 (0.060) | 4/266 | 9.4 | 6.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 65 (1.040) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542683 = | 45 (0.680) | 4 (0.060) | 4/266 | 9.4 | 6.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 66 (1.060) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1853718 = | 56 (0.840) | 4 (0.060) | 4/276 | 9.6 | 7.5% | coding (262/1359 nt) | ydjE | putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | = 2173995 | 44 (0.680) | pseudogene (282/914 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS,transport, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system galactitol‑specific enzyme IIC | |||||
| * | ? | NC_000913 | 1470336 = | NA (NA) | 57 (0.860) | 4/284 | 9.8 | NA | coding (979/1152 nt) | insI1 | IS30 transposase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1691381 | 55 (0.830) | 3 (0.050) | 3/260 | 9.9 | 5.8% | intergenic (+21/+205) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | NC_000913 | = 1691389 | 47 (0.770) | intergenic (+29/+197) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||